Structure #161589

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	85,026,832 - 85,026,922
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	64.42
Columns	108
Mean single MFE	-32.58
Consensus MFE	-18.28
Combinations/base pair	32 / 21 = 1.52
SCI	0.56
z-score	-2.01
RNA class probability	0.976256

This structure is part of cluster 89549

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 108
 Columns: 108
 Strand: +
 Mean pairwise identity:  64.42
 Mean single sequence MFE: -32.58
 Consensus MFE: -18.28
 Energy contribution: -18.28
 Covariance contribution:  -0.00
 Mean z-score:  -2.01
 Structure conservation index:   0.56
 SVM decision value:   1.77
 SVM RNA-class probability: 0.976256
 Prediction: RNA

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>hg17.chr6/85026922-85026832
GACAGGUGUCAUAUCCUUUGUGCUCUCAUUUAGAGCUUGCACAGCCAAUUCCAUGGCGGCAAAUUUGGCACCAUGUGGGUGGCUGCCUG
..(((((............((((.(((.....)))...))))(((((.(..(((((.(.((....)).).)))))..).)))))))))) ( -32.60)
>canFam1.chr12/47436510-47436420
GACAGGUGUCAUAUUCUCUGUGCUCUCUUUCAGAGCUUGCACAGACAACUCCAUGGUGGCAAAUUUGGCACUAUGUGGGUGGCUGCCCG
....((((((((....(((((((.(((.....)))...)))))))...(..(((((((.((....)).)))))))..)))))).))).. ( -33.80)
>mm5.chr9/87743174-87743093
GACAGGUGUCACAGCCCCUGCGCUCUUGUUCUGCAGUCCCACAGUGGCACAUUUGGCACUAUGUGGGUGGCUGGCUGCCUC
...(((((.(.(((((.(((((.........))))).(((((((((.((....)).)))..)))))).)))))).))))). ( -30.20)
>rn3.chr8/92560562-92560469
GACAGGUGUCACAUCCUCCACACUAGUGUUUAGUGCUUGCACAGCCAGUCCCACAGUGGCACAUUUGGCACUAUGUGGGUGGCUGGCCGCCUC
...(((((............((((((...))))))...((.((((((..(((((((((.((....)).)))..))))))))))))))))))). ( -34.70)
>galGal2.chr3/32843239-32843343
GGCAGGUGUCAUGGGUCUUUGAGGCUAAGCUUUAAGGCCUAUUUUGGUAGAUCGACAAGUUGAUCUCUUGGUGGCAUUUUGGUACUAGGUGGGUGGCAGACAG
.....((((((((((((((.(((((...)))))))))))))..(..(.(((((((....))))))).)..)))))))((((.((((.....)))).))))... ( -31.60)
>consensus
GACAGGUGUCAU______________AUCCUCUGCGCUCUCGUUUAG_AGCUUGCACAGCCAAUCCCAUGGUGGCAAAUUUGGCACUAUGUGGGUGGCUGCCCG____
(((....)))..............................................((((((.((((((((((.((....)).))))))).)))))))))........ (-18.28 = -18.28 +  -0.00)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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