Structure #161606

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	85,211,714 - 85,211,831
Number of sequences	5
Organisms	human, mouse, rat, dog, chicken
Mean pairwise identity	84.2
Columns	120
Mean single MFE	-37.08
Consensus MFE	-22.5
Combinations/base pair	41 / 34 = 1.21
SCI	0.61
z-score	-2.26
RNA class probability	0.714888

This structure is part of cluster 89567

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.20
 Mean single sequence MFE: -37.08
 Consensus MFE: -22.50
 Energy contribution: -23.98
 Covariance contribution:   1.48
 Mean z-score:  -2.26
 Structure conservation index:   0.61
 SVM decision value:   0.38
 SVM RNA-class probability: 0.714888
 Prediction: RNA

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>hg17.chr6/85211831-85211714
GCAUCCUGGGGCAAUAAAAUAAUCUUGGUCUUCUUGUGAAACCACAUUAGUAUGGAGAGGGAACAGAGGCCUUUUGAGUGUUCCUAAGUGCUGUGUAAGCUGCAUUUUUCUCCAGGA
...((((((((...........((((.((((...((((....))))..)).)).))))(((((((.............)))))))((((((.((....)).))))))..)))))))) ( -33.42)
>mm5.chr9/87883379-87883265
GCACCCUGGGGCAGUAAAAUAACCUUGGUCUUCUCAUGAAACACAUUAGUGUGGAGAGGGAACAGAGGCCCUUUGAGCAGCCCUAAGGGCUGCAUAAGCUGCAUUUCCCCGGGA
....(((((((((((.......((((..(((((((.....((((....)))).)))))))....))))........(((((((...)))))))....))))).....)))))). ( -47.00)
>rn3.chr8/92728809-92728695
GCACCCUGGGGCAGUAAAAUAACCUUGGUCUUCUCAUGAAACACAUUAGUGUGGAGAGGGAACAGAGGCCCUUUGAGCAGCCCUAAGAGCUGCAUAAACUGCAUUUCCCCAUGA
....(.(((((((((.......((((..(((((((.....((((....)))).)))))))....))))........(((((.......)))))....))))).....)))).). ( -35.10)
>canFam1.chr12/47580044-47579924
GCAUCCUGGGGCAAUAAAAUAAUCUUGGUCUUCUUGUGAAACCACAUUAGUAUGGAGAAGGAACAGAGGCCCUUUGAGCACUCCUAAGUGCUGUGUAAGCUGCAUUUUUUUCCCCCAGGA
...((((((((.((.(((((..((((.((((...((((....))))..)).)).)))).......(.(((......((((((....))))))......))).)))))).)).)))))))) ( -35.90)
>galGal2.chr3/32914686-32914801
GCAUCCUGGGGCAAUAAAAUAAUCUCAGUCUUCUUGUGAAACCACAUUAGUGUGGAGAUUGAACAGAAGUUCUUUGAGAACUGUAAGUGCUAUGUAAGCAUCAUUUUUCCCAGGA
...((((((((...........((((((.(((((.((..(((((((....)))))...))..)))))))....)))))).......(((((.....)))))......)))))))) ( -34.00)
>consensus
GCAUCCUGGGGCAAUAAAAUAAUCUUGGUCUUCUUGUGAAACCACAUUAGUGUGGAGAGGGAACAGAGGCCCUUUGAGCAGCCCUAAGUGCUGUGUAAGCUGCAUUUU____CCCCAGGA
....(((((((....(((((...(((((....(((......(((((....)))))((((((........))))))))).....))))).(((.....)))...)))))....))))))). (-22.50 = -23.98 +   1.48) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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