Structure #161687

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	+
Position	85,997,067 - 85,997,187
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	81.36
Columns	120
Mean single MFE	-37.5
Consensus MFE	-30.15
Combinations/base pair	43 / 33 = 1.30
SCI	0.8
z-score	-2.34
RNA class probability	0.9805

This structure is part of cluster 89617

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.36
 Mean single sequence MFE: -37.50
 Consensus MFE: -30.15
 Energy contribution: -28.65
 Covariance contribution:  -1.50
 Mean z-score:  -2.34
 Structure conservation index:   0.80
 SVM decision value:   1.86
 SVM RNA-class probability: 0.980500
 Prediction: RNA

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>hg17.chr6/85997067-85997187
GGGAAUUGCCCACUCUGACACCUUUGGAGUGAUGCGUUCCAAUAUUGUUUUAAUAUCAAAUCCAGAUAAGCUGGGAGGUCUCAUCCUCCUUGCCAUGUGUGCACAGAGAAGCACACAUUU
.(((((.((.(((((..(.....)..)))))..))))))).............((((.......)))).((.((((((......)))))).)).((((((((........)))))))).. ( -40.00)
>mm5.chr9/88596544-88596663
GGGAAUUGCCAGCUCUGACACCUUCAGAGUGAUGUGUUCAAAUAUCACCUCAAUAUCAAAUCCAGAUAAGCCAGGAGGUCUCCCCCUCCCCAGAGGCAGGCAUGGAGAAGCAUGCUUUU
.(((.(((...(((((((.....)))))))(((((......)))))..........))).)))......(((.(((((......))))).....)))(((((((......))))))).. ( -35.50)
>rn3.chr8/93416977-93417096
GGGAAUUGCCAGUUCUGACACCUUCGGAGUGAUGUGUUCAAAUAUCACCUCAAUAUCAAAUCCAGAUAAGCCGGGAGGUCUCUCCCUCUCCAGAGGCAGGCAUGGAGAAGCAUGCUUUU
.(((.(((.....(((((.....)))))(((((((......)))))))........))).)))......((((((((....)))))((....)))))(((((((......))))))).. ( -35.50)
>canFam1.chr12/48213437-48213557
GGGAAUUGCCCAUUCUGACACCUUCAGAGUGAUGUGCUCACAUAUUGUCUUGAUAUCAAAUCCAGAUCAGCUGGGAGGUCUCAUCCUCCUCCUGAUGUGUGCACAGAGAAACACACAUUU
(((.....)))(((((((.....)))))))..(((((.(((((...((((.(((.....))).))))(((..((((((......)))))).)))))))).)))))............... ( -39.00)
>consensus
GGGAAUUGCCAACUCUGACACCUUCAGAGUGAUGUGUUCAAAUAUCACCUCAAUAUCAAAUCCAGAUAAGCCGGGAGGUCUCACCCUCCCCA_GAGGCAGGCACAGAGAAGCACACAUUU
.(((.(((...(((((((.....)))))))(((((......)))))..........))).))).........((((((......))))))...(((((((((........))))))))). (-30.15 = -28.65 +  -1.50)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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