Structure #161690

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	85,997,107 - 85,997,226
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.77
Columns	120
Mean single MFE	-38.35
Consensus MFE	-30.29
Combinations/base pair	39 / 31 = 1.26
SCI	0.79
z-score	-1.84
RNA class probability	0.908923

This structure is part of cluster 89617

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.77
 Mean single sequence MFE: -38.35
 Consensus MFE: -30.29
 Energy contribution: -29.85
 Covariance contribution:  -0.44
 Mean z-score:  -1.84
 Structure conservation index:   0.79
 SVM decision value:   1.06
 SVM RNA-class probability: 0.908923
 Prediction: RNA

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>hg17.chr6/85997226-85997107
CUGCCAAAGCACUUGUGGGUGACCUUGGCACUUAAUGAAAAAUGUGUGCUUCUCUGUGCACACAUGGCAAGGAGGAUGAGACCUCCCAGCUUAUCUGGAUUUGAUAUUAAAACAAUAUU
.((((((.(((((....)))).).)))))).((((((....((((((((........))))))))(((..(((((......)))))..))).............))))))......... ( -36.40)
>mm5.chr9/88596702-88596584
CUGCCAAAGUACUCAUGGGUGACCUUGGCAUCGAACUGGAAAAGCAUGCUUCUCCAUGCCUGCCUCUGGGGAGGGGGAGACCUCCUGGCUUAUCUGGAUUUGAUAUUGAGGUGAUAUU
...(((.........)))((.((((..(.(((((((..((.((((.....(((((...(((.((....)).))).))))).......)))).))..).)))))).)..)))).))... ( -40.00)
>rn3.chr8/93417135-93417017
CUGCCAAAGUACUCAUGGGUGACCUUGGCAUCUAACUGGAAAAGCAUGCUUCUCCAUGCCUGCCUCUGGAGAGGGAGAGACCUCCCGGCUUAUCUGGAUUUGAUAUUGAGGUGAUAUU
..(((......(((..((....))..((((......((((.(((....))).))))....))))....))).(((((....))))))))((((((.(((.....))).)))))).... ( -38.20)
>canFam1.chr12/48213597-48213477
CUGCCAAAGCACCCUGCGGGUGACCUUGGCAUUUAAUAGAAAAUGUGUGUUUCUCUGUGCACACAUCAGGAGGAGGAUGAGACCUCCCAGCUGAUCUGGAUUUGAUAUCAAGACAAUAUG
.((((((.((((((...))))).).)))))).....((((...(((((((........)))))))((((..(((((......)))))...))))))))..((((....))))........ ( -38.80)
>consensus
CUGCCAAAGCACUC_AUGGGUGACCUUGGCAUCUAACUGAAAAAGCAUGCUUCUCCAUGCACACAUC_UGAGGAGGAUGAGACCUCCCAGCUUAUCUGGAUUUGAUAUUAAGACAAUAUU
.((((((.(((((.....)))).).)))))).............((((((........)))))).......(((((......)))))....((((((.(((.....))).)))))).... (-30.29 = -29.85 +  -0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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