Structure #161692

Summary

Genome/Assembly hg17
Chromosome/Contig chr6
Strand +
Position 85,997,147 - 85,997,266
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 79.89
Columns 120
Mean single MFE -42.2
Consensus MFE -31.06
Combinations/base pair 37 / 29 = 1.28
SCI 0.74
z-score -2.51
RNA class probability 0.991869

This structure is part of cluster 89617

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.89
 Mean single sequence MFE: -42.20
 Consensus MFE: -31.06
 Energy contribution: -29.75
 Covariance contribution:  -1.31
 Mean z-score:  -2.51
 Structure conservation index:   0.74
 SVM decision value:   2.29
 SVM RNA-class probability: 0.991869
 Prediction: RNA

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>hg17.chr6/85997147-85997266
UCAUCCUCCUUGCCAUGUGUGCACAGAGAAGCACACAUUUUUCAUUAAGUGCCAAGGUCACCCACAAGUGCUUUGGCAGGGCUGUGUGGAGAAGUUGUAUAGCACCUGCCUACAUAUGU
.............((((((((......(((((((.(((((......)))))....((....))....)))))))((((((((((((..(.....)..)))))).)))))))))))))). ( -40.00)
>mm5.chr9/88596624-88596742
UCCCCCUCCCCAGAGGCAGGCAUGGAGAAGCAUGCUUUUCCAGUUCGAUGCCAAGGUCACCCAUGAGUACUUUGGCAGAGCUGUGUGGAGAAGUUUCACAGCACCUGCAUACAUGUGU
.....(((....)))(((((..((((((((....))))))))......(((((((((.((......)))))))))))..((((((...........)))))).))))).......... ( -41.40)
>rn3.chr8/93417057-93417175
UCUCCCUCUCCAGAGGCAGGCAUGGAGAAGCAUGCUUUUCCAGUUAGAUGCCAAGGUCACCCAUGAGUACUUUGGCAGAGCUGUGGGGAGAAGUUUCAUAGCACCUGCCUACAUGUGU
..........((.(((((((..((((((((....))))))))......(((((((((.((......)))))))))))..((((((..(.....)..)))))).)))))))...))... ( -46.10)
>canFam1.chr12/48213517-48213637
UCAUCCUCCUCCUGAUGUGUGCACAGAGAAACACACAUUUUCUAUUAAAUGCCAAGGUCACCCGCAGGGUGCUUUGGCAGAGCUGUGCGGAGAAGUUGUACAGCACCUGCCUACAUAUGU
..............(((((((..((((((((.......)))))......((((((((.(((((...)))))))))))))..(((((((((.....)))))))))..)))..))))))).. ( -41.30)
>consensus
UCACCCUCCCCA_GAGGCAGGCACAGAGAAGCACACAUUUCCAAUUAAAUGCCAAGGUCACCCAC_GAGUACUUUGGCAGAGCUGUGUGGAGAAGUUGCACAGCACCUGCCUACAUAUGU
.............(((((((((........)))))))))..........(((((((((.((.......)))))))))))..(((((((((.....)))))))))................ (-31.06 = -29.75 +  -1.31) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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