Structure #161692
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr6 |
Strand | + |
Position | 85,997,147 - 85,997,266 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 79.89 |
Columns | 120 |
Mean single MFE | -42.2 |
Consensus MFE | -31.06 |
Combinations/base pair | 37 / 29 = 1.28 |
SCI | 0.74 |
z-score | -2.51 |
RNA class probability | 0.991869 |
This structure is part of cluster 89617
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.89 Mean single sequence MFE: -42.20 Consensus MFE: -31.06 Energy contribution: -29.75 Covariance contribution: -1.31 Mean z-score: -2.51 Structure conservation index: 0.74 SVM decision value: 2.29 SVM RNA-class probability: 0.991869 Prediction: RNA ###################################################################### >hg17.chr6/85997147-85997266 UCAUCCUCCUUGCCAUGUGUGCACAGAGAAGCACACAUUUUUCAUUAAGUGCCAAGGUCACCCACAAGUGCUUUGGCAGGGCUGUGUGGAGAAGUUGUAUAGCACCUGCCUACAUAUGU .............((((((((......(((((((.(((((......)))))....((....))....)))))))((((((((((((..(.....)..)))))).)))))))))))))). ( -40.00) >mm5.chr9/88596624-88596742 UCCCCCUCCCCAGAGGCAGGCAUGGAGAAGCAUGCUUUUCCAGUUCGAUGCCAAGGUCACCCAUGAGUACUUUGGCAGAGCUGUGUGGAGAAGUUUCACAGCACCUGCAUACAUGUGU .....(((....)))(((((..((((((((....))))))))......(((((((((.((......)))))))))))..((((((...........)))))).))))).......... ( -41.40) >rn3.chr8/93417057-93417175 UCUCCCUCUCCAGAGGCAGGCAUGGAGAAGCAUGCUUUUCCAGUUAGAUGCCAAGGUCACCCAUGAGUACUUUGGCAGAGCUGUGGGGAGAAGUUUCAUAGCACCUGCCUACAUGUGU ..........((.(((((((..((((((((....))))))))......(((((((((.((......)))))))))))..((((((..(.....)..)))))).)))))))...))... ( -46.10) >canFam1.chr12/48213517-48213637 UCAUCCUCCUCCUGAUGUGUGCACAGAGAAACACACAUUUUCUAUUAAAUGCCAAGGUCACCCGCAGGGUGCUUUGGCAGAGCUGUGCGGAGAAGUUGUACAGCACCUGCCUACAUAUGU ..............(((((((..((((((((.......)))))......((((((((.(((((...)))))))))))))..(((((((((.....)))))))))..)))..))))))).. ( -41.30) >consensus UCACCCUCCCCA_GAGGCAGGCACAGAGAAGCACACAUUUCCAAUUAAAUGCCAAGGUCACCCAC_GAGUACUUUGGCAGAGCUGUGUGGAGAAGUUGCACAGCACCUGCCUACAUAUGU .............(((((((((........)))))))))..........(((((((((.((.......)))))))))))..(((((((((.....)))))))))................ (-31.06 = -29.75 + -1.31)