Structure #161695
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 85,997,147 - 85,997,266 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 79.89 |
| Columns | 120 |
| Mean single MFE | -38.83 |
| Consensus MFE | -30.74 |
| Combinations/base pair | 36 / 29 = 1.24 |
| SCI | 0.79 |
| z-score | -1.63 |
| RNA class probability | 0.741397 |
This structure is part of cluster 89617
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.89 Mean single sequence MFE: -38.83 Consensus MFE: -30.74 Energy contribution: -29.93 Covariance contribution: -0.81 Mean z-score: -1.63 Structure conservation index: 0.79 SVM decision value: 0.45 SVM RNA-class probability: 0.741397 Prediction: RNA ###################################################################### >hg17.chr6/85997266-85997147 ACAUAUGUAGGCAGGUGCUAUACAACUUCUCCACACAGCCCUGCCAAAGCACUUGUGGGUGACCUUGGCACUUAAUGAAAAAUGUGUGCUUCUCUGUGCACACAUGGCAAGGAGGAUGA .....(((((((....))).))))..((((((.....(((.((((((.(((((....)))).).))))))...........((((((((........)))))))))))..))))))... ( -38.60) >mm5.chr9/88596742-88596624 ACACAUGUAUGCAGGUGCUGUGAAACUUCUCCACACAGCUCUGCCAAAGUACUCAUGGGUGACCUUGGCAUCGAACUGGAAAAGCAUGCUUCUCCAUGCCUGCCUCUGGGGAGGGGGA ......((((((.((.((((((...........)))))).))(((((.(((((....))).)).)))))..............))))))...(((...(((.((....)).))).))) ( -37.90) >rn3.chr8/93417175-93417057 ACACAUGUAGGCAGGUGCUAUGAAACUUCUCCCCACAGCUCUGCCAAAGUACUCAUGGGUGACCUUGGCAUCUAACUGGAAAAGCAUGCUUCUCCAUGCCUGCCUCUGGAGAGGGAGA .........((((((.(((.((...........)).)))))))))......(((..((....))..((((......((((.(((....))).))))))))..((((....))))))). ( -36.40) >canFam1.chr12/48213637-48213517 ACAUAUGUAGGCAGGUGCUGUACAACUUCUCCGCACAGCUCUGCCAAAGCACCCUGCGGGUGACCUUGGCAUUUAAUAGAAAAUGUGUGUUUCUCUGUGCACACAUCAGGAGGAGGAUGA .(((.(((((((....))).)))).(((((((.........((((((.((((((...))))).).))))))...........((((((((........))))))))..))))))).))). ( -42.40) >consensus ACACAUGUAGGCAGGUGCUAUAAAACUUCUCCACACAGCUCUGCCAAAGCACUC_AUGGGUGACCUUGGCAUCUAACUGAAAAAGCAUGCUUCUCCAUGCACACAUC_UGAGGAGGAUGA .(((.((....)).)))........(((((((.........((((((.(((((.....)))).).)))))).............((((((........)))))).....))))))).... (-30.74 = -29.93 + -0.81)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
