Structure #161696

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	+
Position	85,997,187 - 85,997,306
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	83.52
Columns	120
Mean single MFE	-39.55
Consensus MFE	-25.71
Combinations/base pair	37 / 32 = 1.16
SCI	0.65
z-score	-1.94
RNA class probability	0.739051

This structure is part of cluster 89617

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.52
 Mean single sequence MFE: -39.55
 Consensus MFE: -25.71
 Energy contribution: -25.78
 Covariance contribution:   0.06
 Mean z-score:  -1.94
 Structure conservation index:   0.65
 SVM decision value:   0.44
 SVM RNA-class probability: 0.739051
 Prediction: RNA

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>hg17.chr6/85997187-85997306
UUCAUUAAGUGCCAAGGUCACCCACAAGUGCUUUGGCAGGGCUGUGUGGAGAAGUUGUAUAGCACCUGCCUACAUAUGUUUGGCACAGUGCCCUCUCCUUGCUUCCUCUCUGAUCAGAA
........(((((((((....))(((.(((....((((((((((((..(.....)..)))))).))))))..))).))))))))))......................(((....))). ( -36.40)
>mm5.chr9/88596663-88596781
CCAGUUCGAUGCCAAGGUCACCCAUGAGUACUUUGGCAGAGCUGUGUGGAGAAGUUUCACAGCACCUGCAUACAUGUGUUUGGCCCAGCGCCCGCUCUCCAUUCCCCUCUGAUCUGAA
.(((.((...((((((((.((......))))))))))((((..(.(((((((.(..(((.(((((.((....)).))))))))..).((....))))))))).)..)))))).))).. ( -37.10)
>rn3.chr8/93417096-93417213
CCAGUUAGAUGCCAAGGUCACCCAUGAGUACUUUGGCAGAGCUGUGGGGAGAAGUUUCAUAGCACCUGCCUACAUGUGUUUGGCCCAGUGCCCUCUCUCCAUUCUCUCUGAUCUGAA
.(((((((((((((((((.((......)))))))))))(((..(((((((((.(.......((((..(((.((....))..)))...))))).))))))))).)))))))).))).. ( -42.91)
>canFam1.chr12/48213557-48213677
UCUAUUAAAUGCCAAGGUCACCCGCAGGGUGCUUUGGCAGAGCUGUGCGGAGAAGUUGUACAGCACCUGCCUACAUAUGUUUGGCCCUGUGCCCUCUCCCUGCUUCCCCUCUGAUCAGAA
(((((((..((((((((.(((((...)))))))))))))((((...(.(((((....((((((.....(((.((....))..))).))))))..)))))).))))......)))).))). ( -41.80)
>consensus
CCAAUUAAAUGCCAAGGUCACCCAC_GAGUACUUUGGCAGAGCUGUGUGGAGAAGUUGCACAGCACCUGCCUACAUAUGUUUGGCCCAGUGCCCUCUCCCCA_UUCCCCUCUGAUCAGAA
..........((((((((.((.......))))))))))((((..(((.(((((........(((((.((....)).))))).(((.....))).))))).))).....))))........ (-25.71 = -25.78 +   0.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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