Structure #161926

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	+
Position	90,765,786 - 90,765,899
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	78.7
Columns	120
Mean single MFE	-28.58
Consensus MFE	-16.02
Combinations/base pair	24 / 20 = 1.20
SCI	0.56
z-score	-1.88
RNA class probability	0.683564

This structure is part of cluster 89746

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.70
 Mean single sequence MFE: -28.58
 Consensus MFE: -16.02
 Energy contribution: -16.90
 Covariance contribution:   0.88
 Mean z-score:  -1.88
 Structure conservation index:   0.56
 SVM decision value:   0.31
 SVM RNA-class probability: 0.683564
 Prediction: RNA

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>hg17.chr6/90765786-90765899
AAGGAUGAAGCCAUGCUAAUUGGACAAUGGCUUGCUGCCAGUUCGUGCUGGCGUGACCUACAAUACCCUUGGCUGACAGCCAUGAUGUCUCUUUGUCACACCUUUUUUUUUUU
((((...(((((((.((....))...)))))))...((((((....))))))(((((............((((.....))))............))))).))))......... ( -34.45)
>canFam1.chr12/52102868-52102981
AACGAUGAAGCCAUGCUAAUUGGACAAUGGCUUGCUGCCAGUUCAUGUUGGCAUGACCUACAAUACCCUUGGCUGACGGCCAUUAUGUUUCUCUAGCACACUUUUUUUUUUUU
...((.(((((((((((((((((((..((((.....))))))))).)))))))))..............((((.....))))....))))))).................... ( -31.40)
>mm5.chr4/121400080-121399964
AGCCACGAAGCCAUGCUAAUUGGAAAGUGGCUUAUUGCCAACCCAUGCUGACAUGCCCUACAAUUCUCUGGCUGCCAGCCGCUGUCUCCCGAUCACACCUCUCACCUUUUUUUUUU
((((((....(((.......)))...))))))..............((((.((.(((............))))).))))..................................... ( -22.00)
>rn3.chr5/124301640-124301530
AGCCACGAAGCCACACUAAUUGGACAGUGGCUUACUGCCAGCUCAUGUUGACAUGACCUACAAUUCCCUGGCUGCCAGCCACUGUCUCCCAAUCACACCUUUUUUUUUUU
......((((...........(((((((((((..(.(((((.(((((....)))))...........))))).)..)))))))))))...........))))........ ( -30.35)
>galGal2.chr3/34932812-34932702
AGCGAUGAAGCAAUGUUAAUUGGAUAAUGGCCUGCUGCCAGCUAAUAUUGGCAUGACCUACAAUACCCUUGGCUGACAGCCGUGUCUGCCUCUCUAUCACACCUUUUUUU
.(.((((.((((((....))))......((((.((((.((((((((((((..........)))))...))))))).)))).).))).....)).)))).).......... ( -24.70)
>consensus
AGCGAUGAAGCCAUGCUAAUUGGACAAUGGCUUGCUGCCAGCUCAUGUUGGCAUGACCUACAAUACCCUUGGCUGACAGCC_U_GCUGUCUCUCUAUCACACCU______UUUUUUUUUU
......((.(((((((((((.......((((.....))))......)))))))))...............(((.....)))......)).))............................ (-16.02 = -16.90 +   0.88)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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