Structure #161930
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 90,765,786 - 90,765,899 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 78.7 |
| Columns | 120 |
| Mean single MFE | -33.24 |
| Consensus MFE | -16.06 |
| Combinations/base pair | 28 / 22 = 1.27 |
| SCI | 0.48 |
| z-score | -2.06 |
| RNA class probability | 0.747365 |
This structure is part of cluster 89746
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 78.70 Mean single sequence MFE: -33.24 Consensus MFE: -16.06 Energy contribution: -15.98 Covariance contribution: -0.08 Mean z-score: -2.06 Structure conservation index: 0.48 SVM decision value: 0.47 SVM RNA-class probability: 0.747365 Prediction: RNA ###################################################################### >hg17.chr6/90765899-90765786 AAAAAAAAAAAGGUGUGACAAAGAGACAUCAUGGCUGUCAGCCAAGGGUAUUGUAGGUCACGCCAGCACGAACUGGCAGCAAGCCAUUGUCCAAUUAGCAUGGCUUCAUCCUU .........((((.(((((...((.((.((.((((.....)))).)))).))....)))))(((((......))))).(.(((((((.((.......))))))))))..)))) ( -33.70) >canFam1.chr12/52102981-52102868 AAAAAAAAAAAAGUGUGCUAGAGAAACAUAAUGGCCGUCAGCCAAGGGUAUUGUAGGUCAUGCCAACAUGAACUGGCAGCAAGCCAUUGUCCAAUUAGCAUGGCUUCAUCGUU ..........(((((((((((......((((((((.....((((.(..(((.((.((.....)).)))))..))))).....))))))))....))))))).))))....... ( -27.60) >mm5.chr4/121399964-121400080 AAAAAAAAAAGGUGAGAGGUGUGAUCGGGAGACAGCGGCUGGCAGCCAGAGAAUUGUAGGGCAUGUCAGCAUGGGUUGGCAAUAAGCCACUUUCCAAUUAGCAUGGCUUCGUGGCU ..........(((.((((((.......(....).((.((((((((((..(......)..))).))))))).((((.((((.....))))...))))....))...))))).).))) ( -34.80) >rn3.chr5/124301530-124301640 AAAAAAAAAAAGGUGUGAUUGGGAGACAGUGGCUGGCAGCCAGGGAAUUGUAGGUCAUGUCAACAUGAGCUGGCAGUAAGCCACUGUCCAAUUAGUGUGGCUUCGUGGCU ...............(((((((...(((((((((.((.(((((...........(((((....))))).))))).)).))))))))))))))))....((((....)))) ( -36.70) >galGal2.chr3/34932702-34932812 AAAAAAAGGUGUGAUAGAGAGGCAGACACGGCUGUCAGCCAAGGGUAUUGUAGGUCAUGCCAAUAUUAGCUGGCAGCAGGCCAUUAUCCAAUUAACAUUGCUUCAUCGCU ..........(((((...(((((((....(((.....)))..(((((.....((((.(((((........)))))...))))..)))))........)))))))))))). ( -33.40) >consensus AAAAAAAAAA______AGGUGUGAUAGAGAGACAGA_A_GGCUGUCAGCCAAGGGUAUUGUAGGUCAUGCCAACAUGAGCUGGCAGCAAGCCAUUGUCCAAUUAGCAUGGCUUCAUCGCU .......................................(((.....)))........((.(((((((((.((...((..((((.....))))...))...)).)))))))))))..... (-16.06 = -15.98 + -0.08)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
