Structure #162003
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 91,142,505 - 91,142,625 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 90.14 |
| Columns | 120 |
| Mean single MFE | -29 |
| Consensus MFE | -20.31 |
| Combinations/base pair | 36 / 33 = 1.09 |
| SCI | 0.7 |
| z-score | -1.75 |
| RNA class probability | 0.519799 |
This structure is part of cluster 89785
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 90.14 Mean single sequence MFE: -29.00 Consensus MFE: -20.31 Energy contribution: -20.75 Covariance contribution: 0.44 Mean z-score: -1.75 Structure conservation index: 0.70 SVM decision value: -0.03 SVM RNA-class probability: 0.519799 Prediction: RNA ###################################################################### >hg17.chr6/91142625-91142505 AGCAACAAAAAUAUGCCUCCAGUGUUCUCACUGCUCAUUAGACCAGCACAGAGCCAGUUCUUGUAUGGCCUGAAUAACUGGUACUUUUUAUAAGCAACUGAAGAGCUAUAAAAAGCUUAA (((.................((((....))))((((.(((((((((..(((.((((.........))))))).....))))).(((.....)))...)))).))))........)))... ( -27.50) >mm5.chr4/121739567-121739687 AGUGACAGAAAUAGGCCUUCAGUGUUCUGGCUGCUCAUUAGACCAGCACUGAGAUGGUGCUCAUAUGGCCUGAAUAACUGAUACUUUUUAUAAGUAACUGAAGAGCUAUAAAAAGCUUAG .....(((...(((((((((((((..(((((((.....))).)))))))))))(((.....)))..)))))).........(((((.....))))).)))..(((((......))))).. ( -33.20) >rn3.chr5/124638417-124638537 AGCGACAGAAAUAGGACUUCAGUGUUCUGGCUGCUCAUUAGACCAGCACUGAGCUGGUGCUCAUAUGGCCUGAAUAACUGAUACUUUUUAUAAGUAACUGAAGAGCUAUAAAAAGCUUAG .....(((..........(((((((((.(((((...((.((((((((.....)))))).)).)).))))).)))).)))))(((((.....))))).)))..(((((......))))).. ( -33.70) >canFam1.chr12/52464020-52463900 AGCAACAAAAAUAUGCCUUCAGUGUUCUCACUGCUCAUUAGACUAGCACUGAACCAGUACUCGUAUGGCCUGAAUAACUGAUACUUUUUAUAAGUAACUGAAGAGCUAUAAAAAGCUUAA .(((.........)))(((((((((((....((((.........))))..))))(((..(......)..))).........(((((.....))))))))))))((((......))))... ( -21.60) >consensus AGCAACAAAAAUAGGCCUUCAGUGUUCUCACUGCUCAUUAGACCAGCACUGAGCCAGUGCUCAUAUGGCCUGAAUAACUGAUACUUUUUAUAAGUAACUGAAGAGCUAUAAAAAGCUUAA ..................(((((((((.....((.(((.((((((((.....)))))).))...)))))..)))).)))))..(((((((((.((.........)))))))))))..... (-20.31 = -20.75 + 0.44)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
