Structure #162005
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | + |
| Position | 91,142,545 - 91,142,658 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 81.38 |
| Columns | 120 |
| Mean single MFE | -28.26 |
| Consensus MFE | -17.65 |
| Combinations/base pair | 30 / 24 = 1.25 |
| SCI | 0.62 |
| z-score | -1.84 |
| RNA class probability | 0.637276 |
This structure is part of cluster 89785
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 81.38 Mean single sequence MFE: -28.27 Consensus MFE: -17.65 Energy contribution: -17.59 Covariance contribution: -0.06 Mean z-score: -1.84 Structure conservation index: 0.62 SVM decision value: 0.21 SVM RNA-class probability: 0.637276 Prediction: RNA ###################################################################### >hg17.chr6/91142545-91142658 CAGUUAUUCAGGCCAUACAAGAACUGGCUCUGUGCUGGUCUAAUGAGCAGUGAGAACACUGGAGGCAUAUUUUUGUUGCUUCUAUUUUCUCACUACUUCCCCUUCCCCCAGUC ........(((((((.........)))).))).(((((......(((.((((((((...((((((((.........))))))))..)))))))).))).........))))). ( -32.96) >mm5.chr4/121739725-121739607 CAGUUAUUCAGGCCAUAUGAGCACCAUCUCAGUGCUGGUCUAAUGAGCAGCCAGAACACUGAAGGCCUAUUUCUGUCACUUCUAUUUUUUCACGGCCUCCUGCCCCCUCUCCUGACUC .(((((...(((((....((......))(((((((((((((....))..)))))..)))))).))))).........................(((.....)))........))))). ( -26.60) >rn3.chr5/124638577-124638457 CAGUUAUUCAGGCCAUAUGAGCACCAGCUCAGUGCUGGUCUAAUGAGCAGCCAGAACACUGAAGUCCUAUUUCUGUCGCUUCUAUUUUUUUCACUACCUCCUGCCCCCCUCUCCUGACUC .......(((((.....(((((....)))))(.((((.((....)).)))))(((((((.(((((...))))).)).).)))).............................)))))... ( -24.40) >canFam1.chr12/52463940-52464053 CAGUUAUUCAGGCCAUACGAGUACUGGUUCAGUGCUAGUCUAAUGAGCAGUGAGAACACUGAAGGCAUAUUUUUGUUGCUUCUAUUUUCUCACCGCUCCCCCACCCCCUUCUC .........((((......(((((((...))))))).))))...((((.(((((((....(((((((......)))..))))....))))))).))))............... ( -29.10) >consensus CAGUUAUUCAGGCCAUACGAGCACCAGCUCAGUGCUGGUCUAAUGAGCAGCCAGAACACUGAAGGCAUAUUUCUGUCGCUUCUA_UUUUCUCACUACCU______CCCCUCCCCCGACUC ...........(((((...((.((((((.....)))))))).))).)).(((((((....((((..............)))).....))))))).......................... (-17.65 = -17.59 + -0.06)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
