Structure #162007

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	+
Position	91,142,585 - 91,142,698
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.25
Columns	120
Mean single MFE	-24.58
Consensus MFE	-13.28
Combinations/base pair	31 / 24 = 1.29
SCI	0.54
z-score	-2.44
RNA class probability	0.907347

This structure is part of cluster 89785

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.25
 Mean single sequence MFE: -24.58
 Consensus MFE: -13.28
 Energy contribution: -14.34
 Covariance contribution:   1.06
 Mean z-score:  -2.44
 Structure conservation index:   0.54
 SVM decision value:   1.05
 SVM RNA-class probability: 0.907347
 Prediction: RNA

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>hg17.chr6/91142585-91142698
UAAUGAGCAGUGAGAACACUGGAGGCAUAUUUUUGUUGCUUCUAUUUUCUCACUACUUCCCCUUCCCCCAGUCUCACAAAUUUCCCCUUUGGACUUAAAUGACUCCAGAAUCU
....(((.((((((((...((((((((.........))))))))..)))))))).))).............................((((((.((....)).)))))).... ( -25.60)
>mm5.chr4/121739764-121739647
UAAUGAGCAGCCAGAACACUGAAGGCCUAUUUCUGUCACUUCUAUUUUUUCACGGCCUCCUGCCCCCUCUCCUGACUCUCACGACUUCCCUCUUUGGACUCGUGUGACUUCAGGAUU
......((((.(((....))).(((((..........................))))).))))......((((((.((.(((((..(((......))).))))).))..)))))).. ( -29.67)
>rn3.chr5/124638616-124638497
UAAUGAGCAGCCAGAACACUGAAGUCCUAUUUCUGUCGCUUCUAUUUUUUUCACUACCUCCUGCCCCCCUCUCCUGACUCUCACGACUUCCCUCUUUGGACUCGGGUGACUCCAAGAUU
....(((((.((((......((((((........((((....................................))))......))))))((.....)).)).)).)).)))....... ( -15.76)
>canFam1.chr12/52463980-52464093
UAAUGAGCAGUGAGAACACUGAAGGCAUAUUUUUGUUGCUUCUAUUUUCUCACCGCUCCCCCACCCCCUUCUCUCACAUGUUUCCCCUUUGGACUCAAAUGACUCCAGAUUUU
....((((.(((((((....(((((((......)))..))))....))))))).)))).............................((((((.((....)).)))))).... ( -27.30)
>consensus
UAAUGAGCAGCCAGAACACUGAAGGCAUAUUUCUGUCGCUUCUA_UUUUCUCACUACCU______CCCCUCCCCCGACUCUCACAACUUCCCCCUUUGGACUCAAAUGACUCCAGAAU_U
....((((((((((((....((((..............)))).....))))))))))))...................................((((((.((....)).)))))).... (-13.28 = -14.34 +   1.06)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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