Structure #162008

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	91,142,585 - 91,142,698
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	78.25
Columns	120
Mean single MFE	-32.85
Consensus MFE	-20.98
Combinations/base pair	41 / 29 = 1.41
SCI	0.64
z-score	-2.5
RNA class probability	0.989123

This structure is part of cluster 89785

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  78.25
 Mean single sequence MFE: -32.85
 Consensus MFE: -20.98
 Energy contribution: -20.98
 Covariance contribution:  -0.00
 Mean z-score:  -2.50
 Structure conservation index:   0.64
 SVM decision value:   2.15
 SVM RNA-class probability: 0.989123
 Prediction: RNA

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>hg17.chr6/91142698-91142585
AGAUUCUGGAGUCAUUUAAGUCCAAAGGGGAAAUUUGUGAGACUGGGGGAAGGGGAAGUAGUGAGAAAAUAGAAGCAACAAAAAUAUGCCUCCAGUGUUCUCACUGCUCAUUA
...(((..(..((((.....(((.....))).....))))..)..)))......((.((((((((((....((.(((.........))).)).....)))))))))))).... ( -29.00)
>mm5.chr4/121739647-121739764
AAUCCUGAAGUCACACGAGUCCAAAGAGGGAAGUCGUGAGAGUCAGGAGAGGGGGCAGGAGGCCGUGAAAAAAUAGAAGUGACAGAAAUAGGCCUUCAGUGUUCUGGCUGCUCAUUA
..((((((..((.(((((.(((......)))..))))).)).))))))....((((((((((((..........................))))))(((....))).)))))).... ( -40.47)
>rn3.chr5/124638497-124638616
AAUCUUGGAGUCACCCGAGUCCAAAGAGGGAAGUCGUGAGAGUCAGGAGAGGGGGGCAGGAGGUAGUGAAAAAAAUAGAAGCGACAGAAAUAGGACUUCAGUGUUCUGGCUGCUCAUUA
..((((.((.((.(.(((.(((......)))..))).).)).))..))))...((((((...((.((.............)).)).....((((((......)))))).)))))).... ( -27.72)
>canFam1.chr12/52464093-52463980
AAAAUCUGGAGUCAUUUGAGUCCAAAGGGGAAACAUGUGAGAGAAGGGGGUGGGGGAGCGGUGAGAAAAUAGAAGCAACAAAAAUAUGCCUUCAGUGUUCUCACUGCUCAUUA
...(((((((.((....)).))).....(....).............))))....((((((((((((.((.((((((.........)).)))).)).)))))))))))).... ( -34.20)
>consensus
A_AUCCUGGAGUCACUCGAGUCCAAAGAGGAAAGUCGUGAGAGUCAGGAGAGGGG______AAGCAGUGAAAAAA_UAGAAGCAACAAAAAUAGGCCUUCAGUGUUCUCACUGCUCAUUA
...((((((..((((.....(((.....))).....))))...)))))).............(((((((((((.....(((((...........).))))....)))))))))))..... (-20.98 = -20.98 +  -0.00) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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