Structure #162040

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	+
Position	91,496,514 - 91,496,632
Number of sequences	5
Organisms	human, mouse, rat, dog, chicken
Mean pairwise identity	84.68
Columns	120
Mean single MFE	-35.56
Consensus MFE	-24.98
Combinations/base pair	47 / 36 = 1.31
SCI	0.7
z-score	-2.96
RNA class probability	0.980763

This structure is part of cluster 89808

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.68
 Mean single sequence MFE: -35.56
 Consensus MFE: -24.98
 Energy contribution: -25.62
 Covariance contribution:   0.64
 Mean z-score:  -2.96
 Structure conservation index:   0.70
 SVM decision value:   1.87
 SVM RNA-class probability: 0.980763
 Prediction: RNA

######################################################################

>hg17.chr6/91496514-91496632
AAUGAAUGUGCUCCCUCCCAGUUGGGAUCUCGGGUGCAUUUACUCAUCUUCAACCAGUGUAAUUAAAGAUGAAAAGUAUAACACUGAUGUAUCCUUCUCUGGGGAGGGAGUUGUUUUA
..((((...((((((((((....((((....(((((((((...(((((((...............)))))))..(((.....)))))))))))).))))..))))))))))...)))) ( -40.76)
>mm5.chr4/122108700-122108582
AAUGAAUCUACUCCCUCCCAAUGGGGAUCUCUGGGGCCUUUACUCAUCUCCAACCAGUGUAAUUAAAGAUGAAAAGUAUAACACUGAUGUACCCUUCUCUGGGGAGGGAGUUGUUUUA
..((((...((((((((((..((((((....((((.......))))))))))..((((((.((..............)).))))))...............))))))))))...)))) ( -37.54)
>rn3.chr5/125024632-125024514
AAUGAAUCUACUCCCUCCCAAUGGGGAUCUCUGGUGCAUUUACUCAUCUCCAACCAGUGUAAUUAAAGAUGAAAAGUGUAACACUGAUGUACCCUUCUCUGGGGAGGGAGUUGUUUUA
..((((...((((((((((...(((((.....((((((((...((((((.................))))))..((((...))))))))))))..))))).))))))))))...)))) ( -41.03)
>canFam1.chr12/52843509-52843627
AAUGAAUCUGUUCCCUCCCAAUUGGGAUCUCAGGCGCAUUUACUCAUCUUCAACCAGUGUAAUUAAAGAUGAAAAGUAUAACACUGAUGUAUACUUCUCUGGGGAGGGAGUUGUUUUA
..((((.(..(((((((((....((((................(((((((...............)))))))..((((((.((....))))))))))))..)))))))))..).)))) ( -30.16)
>galGal2.chr3/35286670-35286551
AAUAAGUGUACUACUUCCCAGCUGGGAUCCUCCUGGUAUGUUCAUUCAUCUUCAACCAGUGUAAUUAAAGGUAAAAGGUGCAACACUGAUGAUUCUUCUCUAGAGAUCUCAUCAGUUUA
....((..(((((..((((....))))......)))))..))....((((((..(((..((....))..)))..))))))....((((((((.((((.....))))..))))))))... ( -28.30)
>consensus
AAUGAAUCUACUCCCUCCCAAUUGGGAUC__UCUGGUGCAUUUACUCAUCUUCAACCAGUGUAAUUAAAGAUGAAAAGUAUAACACUGAUGUAUCCUUCUCUGGGGAGGGAGUUGUUUUA
..((((...((((((((((....((((.......((((((((...(((((((...............)))))))..(((.....)))))))))))..))))..))))))))))...)))) (-24.98 = -25.62 +   0.64)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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