Structure #162046

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	91,496,514 - 91,496,632
Number of sequences	5
Organisms	human, mouse, rat, dog, chicken
Mean pairwise identity	84.68
Columns	120
Mean single MFE	-36.36
Consensus MFE	-30.88
Combinations/base pair	47 / 35 = 1.34
SCI	0.85
z-score	-3.54
RNA class probability	0.999456

This structure is part of cluster 89808

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  84.68
 Mean single sequence MFE: -36.36
 Consensus MFE: -30.88
 Energy contribution: -30.64
 Covariance contribution:  -0.24
 Mean z-score:  -3.54
 Structure conservation index:   0.85
 SVM decision value:   3.62
 SVM RNA-class probability: 0.999456
 Prediction: RNA

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>hg17.chr6/91496632-91496514
UAAAACAACUCCCUCCCCAGAGAAGGAUACAUCAGUGUUAUACUUUUCAUCUUUAAUUACACUGGUUGAAGAUGAGUAAAUGCACCCGAGAUCCCAACUGGGAGGGAGCACAUUCAUU
........(((((((((.((....((((...((.((((.......(((((((((((((.....))))))))))))).....))))..)).))))...))))))))))).......... ( -41.10)
>mm5.chr4/122108582-122108700
UAAAACAACUCCCUCCCCAGAGAAGGGUACAUCAGUGUUAUACUUUUCAUCUUUAAUUACACUGGUUGGAGAUGAGUAAAGGCCCCAGAGAUCCCCAUUGGGAGGGAGUAGAUUCAUU
.......((((((((((....((.(((...(((..((.....((((((((((((((((.....))))))))))))..))))....))..))).))).))))))))))))......... ( -37.40)
>rn3.chr5/125024514-125024632
UAAAACAACUCCCUCCCCAGAGAAGGGUACAUCAGUGUUACACUUUUCAUCUUUAAUUACACUGGUUGGAGAUGAGUAAAUGCACCAGAGAUCCCCAUUGGGAGGGAGUAGAUUCAUU
.......((((((((((..((...(((....((.((((.......(((((((((((((.....))))))))))))).....))))..))...)))..))))))))))))......... ( -40.60)
>canFam1.chr12/52843627-52843509
UAAAACAACUCCCUCCCCAGAGAAGUAUACAUCAGUGUUAUACUUUUCAUCUUUAAUUACACUGGUUGAAGAUGAGUAAAUGCGCCUGAGAUCCCAAUUGGGAGGGAACAGAUUCAUU
.........((((((((..((((((((((((....)).))))))))))((((((((((.....))))))))))..........................))))))))........... ( -34.30)
>galGal2.chr3/35286551-35286670
UAAACUGAUGAGAUCUCUAGAGAAGAAUCAUCAGUGUUGCACCUUUUACCUUUAAUUACACUGGUUGAAGAUGAAUGAACAUACCAGGAGGAUCCCAGCUGGGAAGUAGUACACUUAUU
...((((((((..(((....)))....)))))))).((((.((((((..((((((((.....))))))))(((......)))...)))))).((((....)))).)))).......... ( -28.40)
>consensus
UAAAACAACUCCCUCCCCAGAGAAGGAUACAUCAGUGUUAUACUUUUCAUCUUUAAUUACACUGGUUGAAGAUGAGUAAAUGCACCAGA__GAUCCCAAUUGGGAGGGAGUAGAUUCAUU
.......((((((((.((((....((((...((.((((.......(((((((((((((.....))))))))))))).....))))..))...))))...))))))))))))......... (-30.88 = -30.64 +  -0.24)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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