Structure #162050
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 91,496,552 - 91,496,672 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 87.92 |
| Columns | 120 |
| Mean single MFE | -24.78 |
| Consensus MFE | -20.4 |
| Combinations/base pair | 29 / 25 = 1.16 |
| SCI | 0.82 |
| z-score | -1.64 |
| RNA class probability | 0.781125 |
This structure is part of cluster 89808
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 87.92 Mean single sequence MFE: -24.78 Consensus MFE: -20.40 Energy contribution: -20.12 Covariance contribution: -0.28 Mean z-score: -1.64 Structure conservation index: 0.82 SVM decision value: 0.56 SVM RNA-class probability: 0.781125 Prediction: RNA ###################################################################### >hg17.chr6/91496672-91496552 UUCUCCAGCAUAGUUCAUUUUCCACUGAUGGGUCUACAAUUAAAACAACUCCCUCCCCAGAGAAGGAUACAUCAGUGUUAUACUUUUCAUCUUUAAUUACACUGGUUGAAGAUGAGUAAA ......................(((((((((.....)............((((((....)))..)))..))))))))........(((((((((((((.....))))))))))))).... ( -25.60) >mm5.chr4/122108620-122108740 UUCUCCAACAUAGUUCAUUUUCCACUGAUGGGUCUACAAUUAAAACAACUCCCUCCCCAGAGAAGGGUACAUCAGUGUUAUACUUUUCAUCUUUAAUUACACUGGUUGGAGAUGAGUAAA ......................(((((((((.....)..........((((.(((....)))..)))).))))))))........(((((((((((((.....))))))))))))).... ( -26.10) >rn3.chr5/125024552-125024672 UUCUCCAACAUAGUUCAUUUUCCACUGAUGGGUCUACAAUUAAAACAACUCCCUCCCCAGAGAAGGGUACAUCAGUGUUACACUUUUCAUCUUUAAUUACACUGGUUGGAGAUGAGUAAA ......................(((((((((.....)..........((((.(((....)))..)))).))))))))........(((((((((((((.....))))))))))))).... ( -26.10) >canFam1.chr12/52843667-52843547 UUCUCCAGCAUAGUUCAUUUUCCACUGAUGGGUCUACAAUUAAAACAACUCCCUCCCCAGAGAAGUAUACAUCAGUGUUAUACUUUUCAUCUUUAAUUACACUGGUUGAAGAUGAGUAAA ......................(((((((((.....)..........(((..(((....))).)))...))))))))........(((((((((((((.....))))))))))))).... ( -24.80) >galGal2.chr3/35286591-35286709 AUUUAUGUGAUAUUCCUUUUCCACUGAUAGUUCUAGAAUUAAACUGAUGAGAUCUCUAGAGAAGAAUCAUCAGUGUUGCACCUUUUACCUUUAAUUACACUGGUUGAAGAUGAAUGAA (((((((..((................(((((....))))).((((((((..(((....)))....))))))))))..)..((((.(((............))).))))))))))... ( -21.30) >consensus UUCUCCAACAUAGUUCAUUUUCCACUGAUGGGUCUACAAUUAAAACAACUCCCUCCCCAGAGAAGGAUACAUCAGUGUUAUACUUUUCAUCUUUAAUUACACUGGUUGAAGAUGAGUAAA ......................((((((((.(....)...............(((....))).......))))))))........(((((((((((((.....))))))))))))).... (-20.40 = -20.12 + -0.28)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
