Structure #162990
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 99,701,979 - 99,702,098 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 86.35 |
| Columns | 120 |
| Mean single MFE | -44.68 |
| Consensus MFE | -34.78 |
| Combinations/base pair | 46 / 38 = 1.21 |
| SCI | 0.78 |
| z-score | -5.16 |
| RNA class probability | 0.998631 |
This structure is part of cluster 90290
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 86.35 Mean single sequence MFE: -44.68 Consensus MFE: -34.78 Energy contribution: -36.22 Covariance contribution: 1.44 Mean z-score: -5.16 Structure conservation index: 0.78 SVM decision value: 3.17 SVM RNA-class probability: 0.998631 Prediction: RNA ###################################################################### >hg17.chr6/99702098-99701979 AGCCUACACCCCACUUUGGGAGCUUCAUUUACAUGCACAUUGGAUGCCAUCUGACUGCCUCGGACUGUACCUUUGAACAGAUCCGAUGGGAUCCCCACAUGCAUGUAAAUGAAGCUCCC .................((((((((((((((((((((....((((.(((((.((.....))(((((((........)))).)))))))).)))).....)))))))))))))))))))) ( -55.30) >canFam1.chr12/60324224-60324105 AGCCUACACCCCACUUGGGGAGCUUCAUUUAUAUGCGCAUCGGAUGCCGUCUGACUGCCUCGGACUGUACCUUUGAGCAGAUCCGAUGGGAUCCCCACAUGCAUGUAAAUGAAGCUCCC .................((((((((((((((((((((....((((.(((((.((((((.(((((.......))))))))).)).))))).)))).....)))))))))))))))))))) ( -55.50) >mm5.chr4/132112518-132112637 AGCCUUCACCCCACCUUAGGAGCCUCAUUUGCAUGCACAUCCAAUGCUGUCUGACUGCCUUGGACUGUACCUUUGAGCAGAUCCUGUGGGAUCCCCACAUGCAUGUCAAUGAAGCUCCC ..................(((((.(((((.(((((((..(((((.((.(.....).)).)))))((((........))))....((((((...))))))))))))).))))).))))). ( -42.40) >rn3.chr5/136237060-136237179 AGCCUGCACCCCACCUUAGGAGCCUCAUUUGCAUGCACAUCCAAUGCUGUCUGACUGCCUUGGACUGUACCUUUGAGCAGAUCCAGCGGGAUCCCCACAUGCAUGUCAAUGAAGCUCCC ..................(((((.(((((.(((((((........((((...(((((((..((......))...).)))).))))))(((...)))...))))))).))))).))))). ( -39.90) >galGal2.chr3/767-887 AGCAUCACACCCCACUUUGGGAACUUCAUUGAUAUGCACAUCAUAUGCAAUCUGACUGACUCCUACUGUACCUUUGAACAGAUCCAAUCAGAUACCCAUAUGCAUGUAAAUGAGGCUCCC ..................((((.(((((((.(((((((.....((((..((((((.((.......((((........))))...)).))))))...))))))))))).))))))).)))) ( -30.30) >consensus AGCCU_ACACCCCACUUUGGGAGCUUCAUUUACAUGCACAUCCAAUGCCGUCUGACUGCCUCGGACUGUACCUUUGAGCAGAUCCAAUGGGAUCCCCACAUGCAUGUAAAUGAAGCUCCC ..................((((((((((((.(((((((..((((((((.((((((.....)))))).)))..)))))...(((((....)))))......))))))).)))))))))))) (-34.78 = -36.22 + 1.44)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
