Structure #163067
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | + |
| Position | 100,904,795 - 100,904,915 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 88.49 |
| Columns | 120 |
| Mean single MFE | -29.77 |
| Consensus MFE | -24.7 |
| Combinations/base pair | 40 / 28 = 1.43 |
| SCI | 0.83 |
| z-score | -2.38 |
| RNA class probability | 0.990587 |
This structure is part of cluster 90357
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 88.49 Mean single sequence MFE: -29.77 Consensus MFE: -24.70 Energy contribution: -23.46 Covariance contribution: -1.24 Mean z-score: -2.38 Structure conservation index: 0.83 SVM decision value: 2.22 SVM RNA-class probability: 0.990587 Prediction: RNA ###################################################################### >hg17.chr6/100904795-100904915 AGCUGUUCUUGUCUAAAUGAAUCAAAAGAAGGAUAAGCAGGAACUAGCAUAAAUAAUAGCUGCCUUAAAAGGGGGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCAGGA .((((((((((..((..(...((....)).)..))..))))))).)))..........((((((.......(((((..((....))...)))))......))))))..((((...)))). ( -33.52) >canFam1.chr12/61383436-61383556 AGCUGUUCUUGUCCAAACGAAUCAAAAGAAGGAUAAGCAGGAACUGGCAUAAAUAAUAGCCGCCUUAAAAGGGGGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCAGGA ..(((...((((((................))))))(((((...((((..........(((.(((....))).))).............(((........))).)))))))))..))).. ( -30.99) >mm5.chr10/79591031-79590912 AGCUAUUCUUGUCUAAAUGAAUCAAAAGAAGAAUAAGUAGGAACUAACAUAAAUAAUAGCUGCCUUAAAGGGAGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCAAGA .(((((((((.(..............).)))))).)))....................((((((......(((((..((....))...)))))......)))))).............. ( -23.04) >rn3.chr20/249518-249398 AGCUAUUCUUGUCUAAAUGAAUCAAAAGAAGAAUAAGCAGGAACUAGCACAAAUAAUGGCUGCCUUAAAAGGGAGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCGGGA .((((((((((..((......((....))....))..)))))).))))........((((((((.......(((((..((....))...)))))......))))))))((((...)))). ( -36.12) >galGal2.chr3/39236585-39236468 AGCUGUUCUUGUCUAAACGAAUAAAGAGGAUGAUAAGCAGGAACUGGCAUAAAUAAUAGCUGCUUAAAAUGGGUAGAGAAAUUGAUAGCCUUACAAAUGGUAGCCACCUGUAUGGGG .((((((((((..((..................))..))))))).)))..........((((((......((((.((....))....)))).......))))))..(((....))). ( -25.19) >consensus AGCUGUUCUUGUCUAAAUGAAUCAAAAGAAGGAUAAGCAGGAACUAGCAUAAAUAAUAGCUGCCUUAAAAGGGGGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCAGGA .(((((((((((........................))))))).))))..........((((((.......(((((..((....))...)))))......))))))..((((...)))). (-24.70 = -23.46 + -1.24)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
