Structure #163069
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 100,904,795 - 100,904,915 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 88.49 |
| Columns | 120 |
| Mean single MFE | -27.85 |
| Consensus MFE | -20.1 |
| Combinations/base pair | 34 / 29 = 1.17 |
| SCI | 0.72 |
| z-score | -1.9 |
| RNA class probability | 0.681334 |
This structure is part of cluster 90357
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 88.49 Mean single sequence MFE: -27.85 Consensus MFE: -20.10 Energy contribution: -20.42 Covariance contribution: 0.32 Mean z-score: -1.90 Structure conservation index: 0.72 SVM decision value: 0.31 SVM RNA-class probability: 0.681334 Prediction: RNA ###################################################################### >hg17.chr6/100904915-100904795 UCCUGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCCCCCUUUUAAGGCAGCUAUUAUUUAUGCUAGUUCCUGCUUAUCCUUCUUUUGAUUCAUUUAGACAAGAACAGCU ......(((((((((...))))))))).((((.........((((((.........))))))..............((((.((((......((....)).......)).)).)))))))) ( -27.42) >canFam1.chr12/61383556-61383436 UCCUGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCCCCCUUUUAAGGCGGCUAUUAUUUAUGCCAGUUCCUGCUUAUCCUUCUUUUGAUUCGUUUGGACAAGAACAGCU ..(((...((((.(((((.(((..(((((((..........)))(((.(((....))).)))..))))..))).)))))))))(((.(((................))).)))..))).. ( -28.79) >mm5.chr10/79590912-79591031 UCUUGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCUCCCUUUAAGGCAGCUAUUAUUUAUGUUAGUUCCUACUUAUUCUUCUUUUGAUUCAUUUAGACAAGAAUAGCU ......(((((((((...)))))))))((((((.((.....((((((........)))))).........)).))))))....((((((((..(((((.....))))).)))))))).. ( -27.54) >rn3.chr20/249398-249518 UCCCGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCUCCCUUUUAAGGCAGCCAUUAUUUGUGCUAGUUCCUGCUUAUUCUUCUUUUGAUUCAUUUAGACAAGAAUAGCU ....((((((((((((((((.......((((.............))))........)))))))))...))))))).......(((.((((((..(((((.....))))).))))))))). ( -35.18) >galGal2.chr3/39236468-39236585 CCCCAUACAGGUGGCUACCAUUUGUAAGGCUAUCAAUUUCUCUACCCAUUUUAAGCAGCUAUUAUUUAUGCCAGUUCCUGCUUAUCAUCCUCUUUAUUCGUUUAGACAAGAACAGCU .....(((((((((...))))))))).((((....................(((((((..(((.........)))..)))))))...............((((......)))))))) ( -20.30) >consensus UCCUGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCCCCCUUUUAAGGCAGCUAUUAUUUAUGCUAGUUCCUGCUUAUCCUUCUUUUGAUUCAUUUAGACAAGAACAGCU ......(((((((((...))))))))).((((.........((((((.........))))))..............((((.((((......((....)).......)).)).)))))))) (-20.10 = -20.42 + 0.32)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
