Structure #163072
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | + |
| Position | 100,904,835 - 100,904,946 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 79.91 |
| Columns | 120 |
| Mean single MFE | -25.63 |
| Consensus MFE | -17.5 |
| Combinations/base pair | 26 / 17 = 1.53 |
| SCI | 0.68 |
| z-score | -2.25 |
| RNA class probability | 0.958033 |
This structure is part of cluster 90357
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.91 Mean single sequence MFE: -25.63 Consensus MFE: -17.50 Energy contribution: -16.70 Covariance contribution: -0.80 Mean z-score: -2.25 Structure conservation index: 0.68 SVM decision value: 1.47 SVM RNA-class probability: 0.958033 Prediction: RNA ###################################################################### >hg17.chr6/100904835-100904946 GAACUAGCAUAAAUAAUAGCUGCCUUAAAAGGGGGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCAGGAAAACUCAAAGAAAGAGAAUAAGCAUUUGAAA ......((..........((((((.......(((((..((....))...)))))......))))))..((((...))))....(((.......))).....))........ ( -25.12) >canFam1.chr12/61383476-61383588 GAACUGGCAUAAAUAAUAGCCGCCUUAAAAGGGGGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCAGGAAAACUCAAAGAAUGAGAAUAAGUAUUUGAAGA ....((((..........(((.(((....))).))).............(((........))).))))((((...))))....((((.....))))................ ( -24.70) >mm5.chr10/79591071-79590952 GAACUAACAUAAAUAAUAGCUGCCUUAAAGGGAGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCAAGAAAACUCAAAGAAAGAAGGUAAGGAUUUAAGGAUCCAAAGA ..................((((((......(((((..((....))...)))))......)))))).((((........................))))..(((((....)))))..... ( -26.36) >rn3.chr20/249558-249438 GAACUAGCACAAAUAAUGGCUGCCUUAAAAGGGAGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCGGGAAAACUCAAAGAAAGAGGGUAAGGAUUUAAGGAUUCGAAGA (((((...........((((((((.......(((((..((....))...)))))......))))))))(((.((((.......(((.......))))))))))......)).)))..... ( -31.23) >galGal2.chr3/39236610-39236508 GAACUGGCAUAAAUAAUAGCUGCUUAAAAUGGGUAGAGAAAUUGAUAGCCUUACAAAUGGUAGCCACCUGUAUGGGGAAACUAAAGAGUGAGUAUUUGGUAG ......((.((((((...((((((......((((.((....))....)))).......))))))(((((.....((....))..)).)))..)))))))).. ( -20.72) >consensus GAACUAGCAUAAAUAAUAGCUGCCUUAAAAGGGGGCAGCAAAAUUGAUAGCUCUACAAAUGGCAGCCACCUGUACCAGGAAAACUCAAAGAAAGAGAGUAAGGAUUU________GAAGA ..................((((((.......(((((..((....))...)))))......))))))..((((...))))......................................... (-17.50 = -16.70 + -0.80)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
