Structure #163074
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 100,904,835 - 100,904,946 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 79.91 |
| Columns | 120 |
| Mean single MFE | -24.27 |
| Consensus MFE | -16.72 |
| Combinations/base pair | 26 / 23 = 1.13 |
| SCI | 0.69 |
| z-score | -2.12 |
| RNA class probability | 0.934627 |
This structure is part of cluster 90357
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 79.91 Mean single sequence MFE: -24.27 Consensus MFE: -16.72 Energy contribution: -17.44 Covariance contribution: 0.72 Mean z-score: -2.12 Structure conservation index: 0.69 SVM decision value: 1.24 SVM RNA-class probability: 0.934627 Prediction: RNA ###################################################################### >hg17.chr6/100904946-100904835 UUUCAAAUGCUUAUUCUCUUUCUUUGAGUUUUCCUGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCCCCCUUUUAAGGCAGCUAUUAUUUAUGCUAGUUC ...............(((.......))).....((((((..(((((((...........)))))))......((((((.........)))))).........))))))... ( -24.20) >canFam1.chr12/61383588-61383476 UCUUCAAAUACUUAUUCUCAUUCUUUGAGUUUUCCUGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCCCCCUUUUAAGGCGGCUAUUAUUUAUGCCAGUUC ................((((.....)))).....((((((..(((((((...........)))))))......((((((.........)))))).........))))))... ( -27.30) >mm5.chr10/79590952-79591071 UCUUUGGAUCCUUAAAUCCUUACCUUCUUUCUUUGAGUUUUCUUGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCUCCCUUUAAGGCAGCUAUUAUUUAUGUUAGUUC .((..(((..((((((...............))))))..)))..))(((((((((...)))))))))((((((.((.....((((((........)))))).........)).)))))) ( -26.40) >rn3.chr20/249438-249558 UCUUCGAAUCCUUAAAUCCUUACCCUCUUUCUUUGAGUUUUCCCGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCUCCCUUUUAAGGCAGCCAUUAUUUGUGCUAGUUC .....(((..((((((...............))))))..)))..((((((((((((((((.......((((.............))))........)))))))))...)))))))..... ( -31.74) >galGal2.chr3/39236508-39236610 CUACCAAAUACUCACUCUUUAGUUUCCCCAUACAGGUGGCUACCAUUUGUAAGGCUAUCAAUUUCUCUACCCAUUUUAAGCAGCUAUUAUUUAUGCCAGUUC ...........................((.(((((((((...))))))))).)).........................(((...........)))...... ( -11.70) >consensus UCUUC________AAAUACUUACUCUCUUUCUUUGAGUUUUCCUGGUACAGGUGGCUGCCAUUUGUAGAGCUAUCAAUUUUGCUGCCCCCUUUUAAGGCAGCUAUUAUUUAUGCUAGUUC ..............................................(((((((((...)))))))))((((((.((.....((((((.........)))))).........)).)))))) (-16.72 = -17.44 + 0.72)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
