Structure #165322
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 143,190,370 - 143,190,461 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 75.13 |
| Columns | 101 |
| Mean single MFE | -40.27 |
| Consensus MFE | -25.18 |
| Combinations/base pair | 38 / 28 = 1.36 |
| SCI | 0.63 |
| z-score | -3.25 |
| RNA class probability | 0.999892 |
This structure is part of cluster 91671
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 101 Columns: 101 Strand: + Mean pairwise identity: 75.13 Mean single sequence MFE: -40.28 Consensus MFE: -25.18 Energy contribution: -24.12 Covariance contribution: -1.06 Mean z-score: -3.25 Structure conservation index: 0.63 SVM decision value: 4.41 SVM RNA-class probability: 0.999892 Prediction: RNA ###################################################################### >hg17.chr6/143190461-143190370 CCUUGGCUUAGGGUCAGGGAAGUCCUCGGGCUCUCCUUGGCUCUUUUCCCAUCUGGAGGGAGAUUUCCAUGGAGAACAAUCCAGGGAAGUG .........(((((((((((((((....)))).))))))))))).(((((.......)))))((((((.((((......)))).)))))). ( -37.80) >mm5.chr10/116842390-116842475 CCUUGGCCUAGGCCAGGGAAUCCUCAGGCUCUUGCCUCUGUCCCAUGGAGAAGGAGAGUUCUACAGAGAACAAUCUGGGGAAGUG (((((((....)))))))..(((((((((((((..((((((...)))))).))))).(((((....)))))..)))))))).... ( -37.60) >rn3.chr1/259163063-259163163 CCUUGGCCUAGGUCAGGGAAGUCCUGGGGCUCUCCCUGGCUCUCCCUGGCUCUUGUCCCACGGAGUAGGAGAUUUCUACAGAAAACAAUCUGGGGAAGUG ......(((((((((((((((((....)))).)))))))))((((.(((........))).))))))))..(((((..((((......))))..))))). ( -40.50) >canFam1.chr1/37437338-37437250 CCUUGGCUCAGGGUCGGGGAAGUCCUCGGGCUCUCCUUGGCCCGUUUCCCAUGUGGGAGACUUCCAUGGAGAACAAUCCAGGGAAGUG ((((((....((((((((((((((....)))).))))))))))(((..(((((.((....))..)))))..)))...))))))..... ( -45.20) >consensus CCUUGGCCUAGG_UCAGGGAAGUCCUCGGGCUCUCCUUG__________GCCCUUGUCCCAUGGAGAAGGAGAUUUCCACAGAGAACAAUCCAGGGAAGUG ((((((((...))))))))........((((..................))))...((((((...)))))).((((((.((((......)))).)))))). (-25.18 = -24.12 + -1.06)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
