Structure #165557
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | + |
| Position | 148,188,813 - 148,188,930 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 83.76 |
| Columns | 120 |
| Mean single MFE | -40.9 |
| Consensus MFE | -32.02 |
| Combinations/base pair | 36 / 30 = 1.20 |
| SCI | 0.78 |
| z-score | -4.85 |
| RNA class probability | 0.99916 |
This structure is part of cluster 91809
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.76 Mean single sequence MFE: -40.90 Consensus MFE: -32.02 Energy contribution: -33.02 Covariance contribution: 1.00 Mean z-score: -4.85 Structure conservation index: 0.78 SVM decision value: 3.41 SVM RNA-class probability: 0.999160 Prediction: RNA ###################################################################### >hg17.chr6/148188813-148188930 AAGAUUCUUCAGGCUUUGAACAAAAAUGUUACCAUGGGAACCUGAUUUCACAGCCCAUAGUCCUUUGCAGAACUACACCUGCCUUAUGGUAGAGGUUUCCAUGGCAACAUUUUUGUU ..................((((((((((((.((((((((((((..............((((.((....)).))))...(((((....))))))))))))))))).)))))))))))) ( -41.20) >mm5.chr10/121563728-121563611 AAGAUUCUUCAGGCUUUGAACAAAAAUGUUGCCAUGGGAACCUGCUUUCAUAGCCCACAGUCCUUUGCAGAACUACACCUGCCUUAUGGUAGAGGUUUCCAUGGCAACAUUUUUGUU ..................((((((((((((((((((((((((((((.....)))........................(((((....)))))))))))))))))))))))))))))) ( -47.90) >rn3.chr1/264096180-264096064 AAGAUUCUUCAGGCUUUGAACAAAAUGUUGCCAUGGGAACCUGCUUUCAUAGCCCACAGUCCUUUGCAGAACUACACCUGCCUUAUGGCAGAGGUUUCCAUGGCAACGUUUUUGUU ..................(((((((((((((((((((((((((((.....)))........................(((((....)))))))))))))))))))))).))))))) ( -44.80) >canFam1.chr1/41796393-41796510 AAGAUUCUUCAGGCUUUGAACAAAAAUGUUGCCAUGGGAACCUGAUUUCAUAGCCCAUAGUCCUUUGCACAACUACACCUGCCUUAUGGUAGAGGUUUCCAUGGCAACAUUUUUGUU ..................(((((((((((((((((((((((((..............((((..........))))...(((((....)))))))))))))))))))))))))))))) ( -46.00) >galGal2.chr3/46391782-46391898 GGUACUUCAGCCUCUGGAUGUAACAGUUGCCAUGGGAAUCUGAAUGUUUAACCCCCAAGUUCCUUGUGAAAGUAUACCUUCCUUGUGGCAAAGGUGUUUCUAUAGCAACAUUUAC (.((((((((...))))).))).).(((((((((((((..((.............))..)))).))))..((.(((((((((....))..)))))))..))...)))))...... ( -24.62) >consensus AAGAUUCUUCAGGCUUUGAACAAAAAUGUUGCCAUGGGAACCUGAUUUCAUAGCCCAC_AGUCCUUUGCAGAACUACACCUGCCUUAUGGUAGAG__GUUUCCAUGGCAACAUUUUUGUU ..................(((((((((((((((((((((((...........((.............))..........(((((....)))))....))))))))))))))))))))))) (-32.02 = -33.02 + 1.00)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
