Structure #165560
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr6 |
Strand | - |
Position | 148,188,813 - 148,188,930 |
Number of sequences | 5 |
Organisms | human, mouse, rat, dog, chicken |
Mean pairwise identity | 83.76 |
Columns | 120 |
Mean single MFE | -40.73 |
Consensus MFE | -29.68 |
Combinations/base pair | 43 / 34 = 1.26 |
SCI | 0.73 |
z-score | -4.34 |
RNA class probability | 0.998788 |
This structure is part of cluster 91809
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 83.76 Mean single sequence MFE: -40.73 Consensus MFE: -29.68 Energy contribution: -29.92 Covariance contribution: 0.24 Mean z-score: -4.34 Structure conservation index: 0.73 SVM decision value: 3.23 SVM RNA-class probability: 0.998788 Prediction: RNA ###################################################################### >hg17.chr6/148188930-148188813 AACAAAAAUGUUGCCAUGGAAACCUCUACCAUAAGGCAGGUGUAGUUCUGCAAAGGACUAUGGGCUGUGAAAUCAGGUUCCCAUGGUAACAUUUUUGUUCAAAGCCUGAAGAAUCUU (((((((((((((((((((.(((((.........(((...(((((((((....))))))))).)))........))))).))))))))))))))))))).................. ( -44.23) >mm5.chr10/121563611-121563728 AACAAAAAUGUUGCCAUGGAAACCUCUACCAUAAGGCAGGUGUAGUUCUGCAAAGGACUGUGGGCUAUGAAAGCAGGUUCCCAUGGCAACAUUUUUGUUCAAAGCCUGAAGAAUCUU (((((((((((((((((((.(((((...(((((..(((((......))))).......)))))(((.....)))))))).))))))))))))))))))).................. ( -46.80) >rn3.chr1/264096064-264096180 AACAAAAACGUUGCCAUGGAAACCUCUGCCAUAAGGCAGGUGUAGUUCUGCAAAGGACUGUGGGCUAUGAAAGCAGGUUCCCAUGGCAACAUUUUGUUCAAAGCCUGAAGAAUCUU (((((((..((((((((((.((((((((((....)))))...(((((((....)))))))...(((.....)))))))).)))))))))).))))))).................. ( -43.90) >canFam1.chr1/41796510-41796393 AACAAAAAUGUUGCCAUGGAAACCUCUACCAUAAGGCAGGUGUAGUUGUGCAAAGGACUAUGGGCUAUGAAAUCAGGUUCCCAUGGCAACAUUUUUGUUCAAAGCCUGAAGAAUCUU (((((((((((((((((((.(((((....(((..(((...(((((((.(....).))))))).)))))).....))))).))))))))))))))))))).................. ( -42.70) >galGal2.chr3/46391898-46391782 GUAAAUGUUGCUAUAGAAACACCUUUGCCACAAGGAAGGUAUACUUUCACAAGGAACUUGGGGGUUAAACAUUCAGAUUCCCAUGGCAACUGUUACAUCCAGAGGCUGAAGUACC ((((..((((((((.((((.((((((........))))))....))))...........(((((((.........)))))))))))))))..))))................... ( -26.00) >consensus AACAAAAAUGUUGCCAUGGAAAC__CUCUACCAUAAGGCAGGUGUAGUUCUGCAAAGGACU_GUGGGCUAUGAAAUCAGGUUCCCAUGGCAACAUUUUUGUUCAAAGCCUGAAGAAUCUU (((((((((((((((((((.........((((........)))).((((((....))))))...(((((.........)))))))))))))))))))))))).................. (-29.68 = -29.92 + 0.24)