Structure #165560

Summary

Genome/Assembly hg17
Chromosome/Contig chr6
Strand -
Position 148,188,813 - 148,188,930
Number of sequences 5
Organisms human, mouse, rat, dog, chicken
Mean pairwise identity 83.76
Columns 120
Mean single MFE -40.73
Consensus MFE -29.68
Combinations/base pair 43 / 34 = 1.26
SCI 0.73
z-score -4.34
RNA class probability 0.998788

This structure is part of cluster 91809

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.76
 Mean single sequence MFE: -40.73
 Consensus MFE: -29.68
 Energy contribution: -29.92
 Covariance contribution:   0.24
 Mean z-score:  -4.34
 Structure conservation index:   0.73
 SVM decision value:   3.23
 SVM RNA-class probability: 0.998788
 Prediction: RNA

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>hg17.chr6/148188930-148188813
AACAAAAAUGUUGCCAUGGAAACCUCUACCAUAAGGCAGGUGUAGUUCUGCAAAGGACUAUGGGCUGUGAAAUCAGGUUCCCAUGGUAACAUUUUUGUUCAAAGCCUGAAGAAUCUU
(((((((((((((((((((.(((((.........(((...(((((((((....))))))))).)))........))))).))))))))))))))))))).................. ( -44.23)
>mm5.chr10/121563611-121563728
AACAAAAAUGUUGCCAUGGAAACCUCUACCAUAAGGCAGGUGUAGUUCUGCAAAGGACUGUGGGCUAUGAAAGCAGGUUCCCAUGGCAACAUUUUUGUUCAAAGCCUGAAGAAUCUU
(((((((((((((((((((.(((((...(((((..(((((......))))).......)))))(((.....)))))))).))))))))))))))))))).................. ( -46.80)
>rn3.chr1/264096064-264096180
AACAAAAACGUUGCCAUGGAAACCUCUGCCAUAAGGCAGGUGUAGUUCUGCAAAGGACUGUGGGCUAUGAAAGCAGGUUCCCAUGGCAACAUUUUGUUCAAAGCCUGAAGAAUCUU
(((((((..((((((((((.((((((((((....)))))...(((((((....)))))))...(((.....)))))))).)))))))))).))))))).................. ( -43.90)
>canFam1.chr1/41796510-41796393
AACAAAAAUGUUGCCAUGGAAACCUCUACCAUAAGGCAGGUGUAGUUGUGCAAAGGACUAUGGGCUAUGAAAUCAGGUUCCCAUGGCAACAUUUUUGUUCAAAGCCUGAAGAAUCUU
(((((((((((((((((((.(((((....(((..(((...(((((((.(....).))))))).)))))).....))))).))))))))))))))))))).................. ( -42.70)
>galGal2.chr3/46391898-46391782
GUAAAUGUUGCUAUAGAAACACCUUUGCCACAAGGAAGGUAUACUUUCACAAGGAACUUGGGGGUUAAACAUUCAGAUUCCCAUGGCAACUGUUACAUCCAGAGGCUGAAGUACC
((((..((((((((.((((.((((((........))))))....))))...........(((((((.........)))))))))))))))..))))................... ( -26.00)
>consensus
AACAAAAAUGUUGCCAUGGAAAC__CUCUACCAUAAGGCAGGUGUAGUUCUGCAAAGGACU_GUGGGCUAUGAAAUCAGGUUCCCAUGGCAACAUUUUUGUUCAAAGCCUGAAGAAUCUU
(((((((((((((((((((.........((((........)))).((((((....))))))...(((((.........)))))))))))))))))))))))).................. (-29.68 = -29.92 +   0.24) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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