Structure #165563
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr6 |
Strand | + |
Position | 148,188,892 - 148,188,980 |
Number of sequences | 5 |
Organisms | human, mouse, rat, dog, chicken |
Mean pairwise identity | 77.04 |
Columns | 110 |
Mean single MFE | -26.04 |
Consensus MFE | -15.8 |
Combinations/base pair | 27 / 20 = 1.35 |
SCI | 0.61 |
z-score | -2.58 |
RNA class probability | 0.994454 |
This structure is part of cluster 91809
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 110 Columns: 110 Strand: + Mean pairwise identity: 77.04 Mean single sequence MFE: -26.04 Consensus MFE: -15.80 Energy contribution: -16.68 Covariance contribution: 0.88 Mean z-score: -2.58 Structure conservation index: 0.61 SVM decision value: 2.48 SVM RNA-class probability: 0.994454 Prediction: RNA ###################################################################### >hg17.chr6/148188892-148188980 UGCCUUAUGGUAGAGGUUUCCAUGGCAACAUUUUUGUUCAAGGAACAUAGAACUUGAAGAAUAUGCUACGAGUCUCUUUUAAAUGUGU ((((....))))(((..((...(((((......((.((((((..........)))))).))..))))).))..)))............ ( -17.90) >mm5.chr10/121563780-121563690 UGCCUUAUGGUAGAGGUUUCCAUGGCAACAUUUUUGUUCAGGGAACACAGAACUUGAGCAGAAUAUGCCAGGAGUCUCUUUUAAAUAUGU ((((....))))(((..(.((.(((((....(((((((((((..........)))))))))))..))))))))..)))............ ( -30.00) >rn3.chr1/264096232-264096142 UGCCUUAUGGCAGAGGUUUCCAUGGCAACGUUUUUGUUCAGGGAACAUAGGACUUGAACAGAAUAUGCCAGGAGUCUCUUUUAAAUAUGU ((((....))))(((..(.((.(((((....(((((((((((..........)))))))))))..))))))))..)))............ ( -32.00) >canFam1.chr1/41796472-41796563 UGCCUUAUGGUAGAGGUUUCCAUGGCAACAUUUUUGUUCAGGGAACAUAGAACUUGAACAGAAUAUGCCACGAUUCUCUUUUAAAAUAUAU ((((....))))((((..((..(((((....(((((((((((..........)))))))))))..))))).)).))))............. ( -25.90) >galGal2.chr3/46391861-46391967 UUCCUUGUGGCAAAGGUGUUUCUAUAGCAACAUUUACUGGAGGCCAUAGAACUUACACAGGAUGUGCCAUAAGACUUCUUUUGCACAUUAUCUGUCUUAAAUAUGU ...(((((((((...((((((((((.((..((.....))...)).))))))...))))......)))))))))................................. ( -24.40) >consensus UGCCUUAUGGUAGAG__GUUUCCAUGGCAACAUUUUUGUUCAGGGAACAUAGAACUUGAACAGAAUAUGCCACGAG_________________UCUCUUUU_AAAUAUGU ((((....))))............(((((....(((((((((((..........)))))))))))..)))))...................................... (-15.80 = -16.68 + 0.88)