Structure #165586
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | + |
| Position | 148,404,320 - 148,404,440 |
| Number of sequences | 5 |
| Organisms | human, mouse, rat, dog, chicken |
| Mean pairwise identity | 81.75 |
| Columns | 120 |
| Mean single MFE | -29.46 |
| Consensus MFE | -21.86 |
| Combinations/base pair | 41 / 28 = 1.46 |
| SCI | 0.74 |
| z-score | -2.21 |
| RNA class probability | 0.944193 |
This structure is part of cluster 91828
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 81.75 Mean single sequence MFE: -29.46 Consensus MFE: -21.86 Energy contribution: -21.50 Covariance contribution: -0.36 Mean z-score: -2.21 Structure conservation index: 0.74 SVM decision value: 1.32 SVM RNA-class probability: 0.944193 Prediction: RNA ###################################################################### >hg17.chr6/148404320-148404440 AUGCCAUCAGCAUAUAAUAGCAACACUUUGAAAAAAGUUUAAGUAGAUAUUGGCUUUUGUUGCCAGUACCAAGAUUUAUUGGUUCAAGAGUUAUUGAUCAUGGGCAAAUCUUGGCCAUUA ((((.....))))...........(((((....))))).......(((..(((((((((..(((((((........))))))).)))))))))...)))((((.((.....)).)))).. ( -29.10) >mm5.chr10/121795201-121795081 AUGCCAUCAGCAUAUUAUAACAACACUUUGAAAAAAGUUUAAGUAGAUAUUGGCUUUUGUUGCCAAUACCAGGAUUUAUUGGCCCGAGAGUCAUCGAUUGUGGGCAAAUCUUGGCCAUUA ((((.....))))...........(((((....))))).........(((((((.......)))))))(((((((((....(((((..((((...)))).))))))))))))))...... ( -32.00) >rn3.chr1/264337211-264337091 AUGCCAUCAGCAUAUUAUAACAACACUUUGAAAAAAGUUUAAGUAGAUAUUGGCUUUUGUUGCCAAUACCAGGAUUUAUUGGCCCAAGAGUCAUCGAUUGUGGUCAAAUCUUGGCCAUUA ((((.....))))...........(((((....))))).......(((..(((((((((..(((((((........))))))).)))))))))...)))(((((((.....))))))).. ( -31.50) >canFam1.chr1/42018824-42018944 AUGCCAUCAGCAUAUUAUAACAACACUUUGAAAAAAGUUUAAGUAGAUAUUGGCUUUUGUUGCUGAUAUCAAGAUUUAUUGGUUCAAAAGUUAUUGAUCAUGGGCAAAUCUCGGCCAUUA .((((...................(((((....))))).......(((..(((((((((..((..(((........)))..)).)))))))))...)))...)))).............. ( -26.10) >galGal2.chr3/46486201-46486319 AUAUUAACAGAAUGCUUUUUCAGUGCGUAGAAGAUUCCUAAGUAGGCAUUGACUUCUGUUGCCAAUAUCAAGAUUUAUUGGCACAAGAGAUAUUGACUACAGUAAAUCUAUGACAUUA .........(((......)))((((((((((((....))..((((.((.((.((..(((.(((((((........))))))))))..)).)).)).))))......)))))).)))). ( -28.60) >consensus AUGCCAUCAGCAUAUUAUAACAACACUUUGAAAAAAGUUUAAGUAGAUAUUGGCUUUUGUUGCCAAUACCAAGAUUUAUUGGCCCAAGAGUUAUUGAUUAUGGGCAAAUCUUGGCCAUUA .((((...................(((((....))))).......(((..(((((((((..(((((((........))))))).)))))))))...)))...)))).............. (-21.86 = -21.50 + -0.36)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
