Structure #165590
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr6 |
Strand | - |
Position | 148,404,320 - 148,404,440 |
Number of sequences | 5 |
Organisms | human, mouse, rat, dog, chicken |
Mean pairwise identity | 81.75 |
Columns | 120 |
Mean single MFE | -25.51 |
Consensus MFE | -15.46 |
Combinations/base pair | 31 / 23 = 1.35 |
SCI | 0.61 |
z-score | -1.78 |
RNA class probability | 0.537876 |
This structure is part of cluster 91828
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 81.75 Mean single sequence MFE: -25.51 Consensus MFE: -15.46 Energy contribution: -15.98 Covariance contribution: 0.52 Mean z-score: -1.78 Structure conservation index: 0.61 SVM decision value: 0.01 SVM RNA-class probability: 0.537876 Prediction: RNA ###################################################################### >hg17.chr6/148404440-148404320 UAAUGGCCAAGAUUUGCCCAUGAUCAAUAACUCUUGAACCAAUAAAUCUUGGUACUGGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGCUAUUAUAUGCUGAUGGCAU .....(((((((((((.....(.((((......)))).)...)))))))))))..((((.......))))............(((((....)))))..((((((((.....)))))))). ( -25.90) >mm5.chr10/121795081-121795201 UAAUGGCCAAGAUUUGCCCACAAUCGAUGACUCUCGGGCCAAUAAAUCCUGGUAUUGGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGUUAUAAUAUGCUGAUGGCAU .....((((.(((((((((................))))....)))))..(((((((((.......)))))))))..............(((..((((((...))))))..))))))).. ( -27.29) >rn3.chr1/264337091-264337211 UAAUGGCCAAGAUUUGACCACAAUCGAUGACUCUUGGGCCAAUAAAUCCUGGUAUUGGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGUUAUAAUAUGCUGAUGGCAU ...(((((((((.((((......))))....)))).))))).........(((((((((.......)))))))))...................((((..(((........)))..)))) ( -29.30) >canFam1.chr1/42018944-42018824 UAAUGGCCGAGAUUUGCCCAUGAUCAAUAACUUUUGAACCAAUAAAUCUUGAUAUCAGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGUUAUAAUAUGCUGAUGGCAU .....(((((((((((.....(.((((......)))).)...))))))))...(((((((........((((((....................))))))........)))))))))).. ( -21.34) >galGal2.chr3/46486319-46486201 UAAUGUCAUAGAUUUACUGUAGUCAAUAUCUCUUGUGCCAAUAAAUCUUGAUAUUGGCAACAGAAGUCAAUGCCUACUUAGGAAUCUUCUACGCACUGAAAAAGCAUUCUGUUAAUAU ..........(((((.((((.(((((((((..((((....)))).....))))))))).)))))))))(((((....((((..............))))....))))).......... ( -23.74) >consensus UAAUGGCCAAGAUUUGCCCAUAAUCAAUAACUCUUGAGCCAAUAAAUCUUGGUAUUGGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGUUAUAAUAUGCUGAUGGCAU .....((((.((((((.......((((......)))).....))))))..(((((((((.......))))))))).......................................)))).. (-15.46 = -15.98 + 0.52)