Structure #165590

Summary

Genome/Assembly hg17
Chromosome/Contig chr6
Strand -
Position 148,404,320 - 148,404,440
Number of sequences 5
Organisms human, mouse, rat, dog, chicken
Mean pairwise identity 81.75
Columns 120
Mean single MFE -25.51
Consensus MFE -15.46
Combinations/base pair 31 / 23 = 1.35
SCI 0.61
z-score -1.78
RNA class probability 0.537876

This structure is part of cluster 91828

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  81.75
 Mean single sequence MFE: -25.51
 Consensus MFE: -15.46
 Energy contribution: -15.98
 Covariance contribution:   0.52
 Mean z-score:  -1.78
 Structure conservation index:   0.61
 SVM decision value:   0.01
 SVM RNA-class probability: 0.537876
 Prediction: RNA

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>hg17.chr6/148404440-148404320
UAAUGGCCAAGAUUUGCCCAUGAUCAAUAACUCUUGAACCAAUAAAUCUUGGUACUGGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGCUAUUAUAUGCUGAUGGCAU
.....(((((((((((.....(.((((......)))).)...)))))))))))..((((.......))))............(((((....)))))..((((((((.....)))))))). ( -25.90)
>mm5.chr10/121795081-121795201
UAAUGGCCAAGAUUUGCCCACAAUCGAUGACUCUCGGGCCAAUAAAUCCUGGUAUUGGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGUUAUAAUAUGCUGAUGGCAU
.....((((.(((((((((................))))....)))))..(((((((((.......)))))))))..............(((..((((((...))))))..))))))).. ( -27.29)
>rn3.chr1/264337091-264337211
UAAUGGCCAAGAUUUGACCACAAUCGAUGACUCUUGGGCCAAUAAAUCCUGGUAUUGGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGUUAUAAUAUGCUGAUGGCAU
...(((((((((.((((......))))....)))).))))).........(((((((((.......)))))))))...................((((..(((........)))..)))) ( -29.30)
>canFam1.chr1/42018944-42018824
UAAUGGCCGAGAUUUGCCCAUGAUCAAUAACUUUUGAACCAAUAAAUCUUGAUAUCAGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGUUAUAAUAUGCUGAUGGCAU
.....(((((((((((.....(.((((......)))).)...))))))))...(((((((........((((((....................))))))........)))))))))).. ( -21.34)
>galGal2.chr3/46486319-46486201
UAAUGUCAUAGAUUUACUGUAGUCAAUAUCUCUUGUGCCAAUAAAUCUUGAUAUUGGCAACAGAAGUCAAUGCCUACUUAGGAAUCUUCUACGCACUGAAAAAGCAUUCUGUUAAUAU
..........(((((.((((.(((((((((..((((....)))).....))))))))).)))))))))(((((....((((..............))))....))))).......... ( -23.74)
>consensus
UAAUGGCCAAGAUUUGCCCAUAAUCAAUAACUCUUGAGCCAAUAAAUCUUGGUAUUGGCAACAAAAGCCAAUAUCUACUUAAACUUUUUUCAAAGUGUUGUUAUAAUAUGCUGAUGGCAU
.....((((.((((((.......((((......)))).....))))))..(((((((((.......))))))))).......................................)))).. (-15.46 = -15.98 +   0.52) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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