Structure #165593

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr6
Strand	-
Position	148,404,360 - 148,404,476
Number of sequences	5
Organisms	human, mouse, rat, dog, chicken
Mean pairwise identity	83.33
Columns	120
Mean single MFE	-28.65
Consensus MFE	-16.74
Combinations/base pair	35 / 27 = 1.30
SCI	0.58
z-score	-2.98
RNA class probability	0.95201

This structure is part of cluster 91828

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.33
 Mean single sequence MFE: -28.65
 Consensus MFE: -16.74
 Energy contribution: -16.98
 Covariance contribution:   0.24
 Mean z-score:  -2.98
 Structure conservation index:   0.58
 SVM decision value:   1.40
 SVM RNA-class probability: 0.952010
 Prediction: RNA

######################################################################

>hg17.chr6/148404476-148404360
UCAGCUGAUAAAGAUUUAUUUGUCCUCAAGGCAUAAUAAUGGCCAAGAUUUGCCCAUGAUCAAUAACUCUUGAACCAAUAAAUCUUGGUACUGGCAACAAAAGCCAAUAUCUACUU
..........((((((((((.((..((((((.......((((.((.....)).))))..........)))))))).))))))))))((((.((((.......)))).))))..... ( -24.53)
>mm5.chr10/121795121-121795237
UCAGCUGAUCAAGAUUUAUUUGUCCUGAAGGCAUCAUAAUGGCCAAGAUUUGCCCACAAUCGAUGACUCUCGGGCCAAUAAAUCCUGGUAUUGGCAACAAAAGCCAAUAUCUACUU
............((((((((.(.(((((..(((((((..(((.((.....)).)))..)).)))).)..)))))).))))))))..(((((((((.......)))))))))..... ( -33.80)
>rn3.chr1/264337131-264337247
UCAGCUGAUAAAGAUUUAUUUGUCCUGAAGGCAUCAUAAUGGCCAAGAUUUGACCACAAUCGAUGACUCUUGGGCCAAUAAAUCCUGGUAUUGGCAACAAAAGCCAAUAUCUACUU
............((((((((.((((...((.((((((..(((.((.....)).)))..)).)))).))...)))).))))))))..(((((((((.......)))))))))..... ( -31.60)
>canFam1.chr1/42018980-42018864
UCAGCUGAUAAAGAUUUAUUUGUCCUCAAGGUAUAAUAAUGGCCGAGAUUUGCCCAUGAUCAAUAACUUUUGAACCAAUAAAUCUUGAUAUCAGCAACAAAAGCCAAUAUCUACUU
...(((((((((((((((((.((.(..(((.(((....((((.(((...))).)))).....))).)))..).)).))))))))))..)))))))..................... ( -24.60)
>galGal2.chr3/46486359-46486240
UCUUGGCUGGUAACAAGAUUUAUUAAUCUUUCAGAUAUAAUAAUGUCAUAGAUUUACUGUAGUCAAUAUCUCUUGUGCCAAUAAAUCUUGAUAUUGGCAACAGAAGUCAAUGCCUACUU
....(((.......((((((....))))))...(((((....)))))...(((((.((((.(((((((((..((((....)))).....))))))))).)))))))))...)))..... ( -28.70)
>consensus
UC__AGCUGAUAA__AGAUUUAUUUGUCCUCAAGGCAUAAUAAUGGCCAAGAUUUGCCCAUAAUCAAUAACUCUUGAGCCAAUAAAUCUUGGUAUUGGCAACAAAAGCCAAUAUCUACUU
................((((((((.((.(....(((.........)))..((((.......))))..........).)).))))))))..(((((((((.......)))))))))..... (-16.74 = -16.98 +   0.24)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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