Structure #165657
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr6 |
| Strand | - |
| Position | 149,564,187 - 149,564,381 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 83.23 |
| Columns | 194 |
| Mean single MFE | -56.55 |
| Consensus MFE | -37.2 |
| Combinations/base pair | 59 / 51 = 1.16 |
| SCI | 0.66 |
| z-score | -2.14 |
| RNA class probability | 0.853708 |
This structure is part of cluster 91875
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 194 Columns: 194 Strand: + Mean pairwise identity: 83.23 Mean single sequence MFE: -56.55 Consensus MFE: -37.20 Energy contribution: -38.58 Covariance contribution: 1.37 Mean z-score: -2.14 Structure conservation index: 0.66 SVM decision value: 0.80 SVM RNA-class probability: 0.853708 Prediction: RNA ###################################################################### >hg17.chr6/149564381-149564187 UGUUUCCAGAGCUAAGCAGAGAAGCUCCAGGGAAAUGAAAUCUUCCUCCUUCCCACUGUUCUGUUGUCUUUGAAAACAGCAGAACUGCCAAGAUCAGCAGUUUGAAAGCUUCCUUUGAAGUGUUCCUCAUGCCUUUUUCAUUGGCUUGAGCAAAACAAGUACCUAGACUGUGUGCCCAGUCCCCAGGGGGGACA .((((((.(((((.........)))))...)))))).......((((((((.....(((((....(((..((((((..((((((((((........)))))))(((.(((((....))))).)))....)))..))))))..)))..))))).............(((((......)))))...)))))))).. ( -58.80) >mm5.chr10/7741647-7741458 UGUUUCCAGAACUGAGUAGAGAGGCUCCCAAGAAAUGAAAUCCCCUCUUUCCCAUUUCCCUGUUGUCUUUCAAAACAGCAGGACUGCCAAGAUCAGCCCCCAAAGAGCUUCCUUUGAAGUUCCUCAUGCUUCCCCUACAGCCGGAGCAAAACAACCACCUAGACUGUGUGCCCAGUCCCCAGGGGAACA .((((((.(((((....((.(((((((....((((((...............))))))((((((((........))))))))......................)))))))))....)))))....((((((..(....)..)))))).............(((((......))))).....)))))). ( -50.36) >rn3.chr1/2739011-2738822 UGUUUCCAGCACUGAGUAGAGAGGCUCCCAAGAAAUGAAAUCCCCUCUUUCCCAUUGCCCUGUUGUCUUUCAAAACAGCAGGACUGCCAAGAUCAGCCCUGAAAGAGCUUCCUUUGAAGUUCCUCAUGCUUCUCCGACAGCUGGAGCAAAACAACCACCUAGACUGUGUGCCCAGUCCCCAGGGGAACA ((((.(((((..((.(((((((((......(....).......)))))..........((((((((........)))))))).)))))).((..(((..(((..(((((((....))))))).))).)))..)).....)))))))))......((.(((.(((((......)))))...))))).... ( -54.02) >canFam1.chr1/81871587-81871780 UGUUGCCAGAGCUAAGCAGAGAAGCUCUAAGGGAAUGAAGUUUUCCUCUUUCCCGCUGUUCUGUUGUCUUUCAAAACAGCAGAACUGCCAAGAUCAGCAGUUUGAAAGCCUCCUUUGAGGUAUCCCUCAUGCCUCUUUCACUGGCUUGAGCAAAACAAGCACCUAGACUGCCUGCCCAAUCCCCAAGGGGACA .......((((((.........))))))..(((((.((........)).)))))((.((((((((((........)))))))))).))...(..((((((((((.(((((......(((((((.....))))))).......)))))..((.......))...))))))).)))..)..((((....)))).. ( -63.02) >consensus UGUUUCCAGAACUAAGCAGAGAAGCUCCAAAGAAAUGAAAUCC_CCUCUUUCCCACUGCCCUGUUGUCUUUCAAAACAGCAGAACUGCCAAGAUCAGCACUUAAAAAGCUUCCUUUGAAGU__UCCUCAUGCCUCUCCCAC_AGCUGGAGCAAAACAACCACCUAGACUGUGUGCCCAGUCCCCAGGGGA_ACA .((.(((...(((...(((((((((((...(((((.((........)))))))....((((((((((........))))))))))....................)))))).))))).)))....((((.(((.........))).))))...........(((.(((((......)))))...)))))).)). (-37.20 = -38.58 + 1.37)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
