Structure #166471

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	-
Position	58,112 - 58,231
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	83.19
Columns	120
Mean single MFE	-58.75
Consensus MFE	-45.38
Combinations/base pair	52 / 40 = 1.30
SCI	0.77
z-score	-2.19
RNA class probability	0.943939

This structure is part of cluster 92361

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  83.19
 Mean single sequence MFE: -58.75
 Consensus MFE: -45.38
 Energy contribution: -45.75
 Covariance contribution:   0.38
 Mean z-score:  -2.19
 Structure conservation index:   0.77
 SVM decision value:   1.32
 SVM RNA-class probability: 0.943939
 Prediction: RNA

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>hg17.chr7/58231-58112
GGCAGGAUCCAUUGGGAGGAAACAGGCCACCUUGGAAGGUGUCCCUGGGCCCCCAUCCCCAGGGAUUGGGGCCGUAGGGGGCCCGCUCUGCUGCGUUGACCAGACUCCUGGGCUUUGAA
((((((.(((....)))(....).((((((((....))))..(((((((((((.((((....)))).)))))).)))))))))...)))))).((..(.((((....)))).)..)).. ( -56.10)
>canFam1.chr1/459-579
CGCAGGAUCCGUUGGAAGGAACCGGGUGGCCUUGGAAGGUGUCACUGGGCCCCCAGCCCCAGGGGGUGGGGGCCGUAGUGGGCCUGCUGUGCUGCCCUGGCCUGACUCCUGGGCCUUGAA
....((.(((.......))).))(((..((..(((.((((.((((((((((((((.(((....))))))))))).)))))))))).))).))..))).(((((.......)))))..... ( -64.80)
>mm5.chr7/573-453
GGCAGAAUCCGUAGGAGGAAACCGAGUGGCCUUGGAAGGUGUUGCUGGGCCCCCGGCUCCAGGGGGUGGGGGCCGUAGUGGCACCGCUGUGCUGCCCUGACCAGACUCCUGGGUCUUAAA
(((((..(((......)))..(((((....)))))..(((((..(((((((((((.(((....))))))))))).)))..)))))......)))))..((((((....)).))))..... ( -59.80)
>rn3.chr1/573-453
GGCAGAAUCCGUAGGAAGAAACCGAGUGGCCUUGGAAGGUGUUGUUGGGCCCCCAGCUCCAGGAGGUGGGGGCCGUAGUGGCACCGCUGUGCUGCCCUGACCAGACUCCUGCGUUUUAAA
.....((..(((((((.....(((((....)))))..(((((..(((((((((((.(((...))).)))))))).)))..))))).(((..(......)..)))..)))))))..))... ( -54.30)
>consensus
GGCAGAAUCCGUAGGAAGAAACCGAGUGGCCUUGGAAGGUGUCGCUGGGCCCCCAGCCCCAGGGGGUGGGGGCCGUAGUGGCACCGCUGUGCUGCCCUGACCAGACUCCUGGGCCUUAAA
(((((..((((.(((..(........)..))))))).((((((((((((((((((.(((...))).)))))))).))))))))))......)))))..((((((....))).)))..... (-45.38 = -45.75 +   0.38)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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