Structure #166472

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	+
Position	58,152 - 58,263
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	84.23
Columns	112
Mean single MFE	-46.18
Consensus MFE	-30.2
Combinations/base pair	43 / 35 = 1.23
SCI	0.65
z-score	-2.51
RNA class probability	0.920916

This structure is part of cluster 92361

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 112
 Columns: 112
 Strand: +
 Mean pairwise identity:  84.23
 Mean single sequence MFE: -46.17
 Consensus MFE: -30.20
 Energy contribution: -31.57
 Covariance contribution:   1.37
 Mean z-score:  -2.51
 Structure conservation index:   0.65
 SVM decision value:   1.14
 SVM RNA-class probability: 0.920916
 Prediction: RNA

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>hg17.chr7/58152-58263
CCCUACGGCCCCAAUCCCUGGGGAUGGGGGCCCAGGGACACCUUCCAAGGUGGCCUGUUUCCUCCCAAUGGAUCCUGCCACCUUCUGGUGCAAGAGACCUGAAAGUGUGGG
.(((((((((((.((((....)))).))))))((((..((((....((((((((..(..(((.......)))..).))))))))..)))).......)))).....))))) ( -54.40)
>canFam1.chr1/611-499
CACUACGGCCCCCACCCCCUGGGGCUGGGGGCCCAGUGACACCUUCCAAGGCCACCCGGUUCCUUCCAACGGAUCCUGCGGCUUUCCGACGCAAGAGACCUGAAAGCGUGGG
((((..(((((((((((....))).)))))))).)))).........((((((.(..((.(((.......))).)).).))))))((.((((.((....))....)))).)) ( -48.20)
>mm5.chr7/493-605
CACUACGGCCCCCACCCCCUGGAGCCGGGGGCCCAGCAACACCUUCCAAGGCCACUCGGUUUCCUCCUACGGAUUCUGCCACCUUUCGGCGCAAGAGACCUGAAAGUGUUGG
......(((((((.(((...)).)..)))))))...((((((.(((..(((...(((((..(((......)))..))(((.......)))....))).)))))).)))))). ( -39.10)
>rn3.chr1/493-605
CACUACGGCCCCCACCUCCUGGAGCUGGGGGCCCAACAACACCUUCCAAGGCCACUCGGUUUCUUCCUACGGAUUCUGCCACCUUUCGGCGCAAGAGACCUGAAAGUGUUGG
......((((((((.(((...))).))))))))...((((((.(((..((....)).((((((((.(....).....(((.......)))..)))))))).))).)))))). ( -43.00)
>consensus
CACUACGGCCCCCACCCCCUGGAGCUGGGGGCCCAGCAACACCUUCCAAGGCCACCCGGUUCCUUCCAACGGAUCCUGCCACCUUCCGGCGCAAGAGACCUGAAAGUGUGGG
......((((((((.(((...))).))))))))...((((((.(((...((....))((((((((.(..((((...........))))..).)))))))).))).)))))). (-30.20 = -31.57 +   1.37)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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