Structure #166473

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	-
Position	58,152 - 58,263
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	84.23
Columns	112
Mean single MFE	-57.35
Consensus MFE	-48.8
Combinations/base pair	55 / 40 = 1.38
SCI	0.85
z-score	-3.65
RNA class probability	0.99869

This structure is part of cluster 92361

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 112
 Columns: 112
 Strand: +
 Mean pairwise identity:  84.23
 Mean single sequence MFE: -57.35
 Consensus MFE: -48.80
 Energy contribution: -46.93
 Covariance contribution:  -1.87
 Mean z-score:  -3.65
 Structure conservation index:   0.85
 SVM decision value:   3.19
 SVM RNA-class probability: 0.998690
 Prediction: RNA

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>hg17.chr7/58263-58152
CCCACACUUUCAGGUCUCUUGCACCAGAAGGUGGCAGGAUCCAUUGGGAGGAAACAGGCCACCUUGGAAGGUGUCCCUGGGCCCCCAUCCCCAGGGAUUGGGGCCGUAGGG
...((((((((.((((....).)))..((((((((....(((....)))(....)..)))))))).))))))))(((((((((((.((((....)))).)))))).))))) ( -58.40)
>canFam1.chr1/499-611
CCCACGCUUUCAGGUCUCUUGCGUCGGAAAGCCGCAGGAUCCGUUGGAAGGAACCGGGUGGCCUUGGAAGGUGUCACUGGGCCCCCAGCCCCAGGGGGUGGGGGCCGUAGUG
..(((.((((((((((.((((((.(.....).))).((.(((.......))).))))).)))).))))))))).(((((((((((((.(((....))))))))))).))))) ( -56.90)
>mm5.chr7/605-493
CCAACACUUUCAGGUCUCUUGCGCCGAAAGGUGGCAGAAUCCGUAGGAGGAAACCGAGUGGCCUUGGAAGGUGUUGCUGGGCCCCCGGCUCCAGGGGGUGGGGGCCGUAGUG
.(((((((((((((((.((((((((....))))......(((......)))...)))).)))))..))))))))))(((((((((((.(((....))))))))))).))).. ( -58.00)
>rn3.chr1/605-493
CCAACACUUUCAGGUCUCUUGCGCCGAAAGGUGGCAGAAUCCGUAGGAAGAAACCGAGUGGCCUUGGAAGGUGUUGUUGGGCCCCCAGCUCCAGGAGGUGGGGGCCGUAGUG
.(((((((((((((((.((((((((....))))......(((...)))......)))).)))))..))))))))))...((((((((.(((...))).))))))))...... ( -56.10)
>consensus
CCAACACUUUCAGGUCUCUUGCGCCGAAAGGUGGCAGAAUCCGUAGGAAGAAACCGAGUGGCCUUGGAAGGUGUCGCUGGGCCCCCAGCCCCAGGGGGUGGGGGCCGUAGUG
...(((((((((((((.((((((((....))))......(((...)))......)))).)))))..))))))))(((((((((((((.(((...))).)))))))).))))) (-48.80 = -46.93 +  -1.87)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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