Structure #167099

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	-
Position	12,673,969 - 12,674,073
Number of sequences	5
Organisms	human, mouse, rat, dog, chicken
Mean pairwise identity	74
Columns	120
Mean single MFE	-35.17
Consensus MFE	-20.27
Combinations/base pair	34 / 25 = 1.36
SCI	0.58
z-score	-1.95
RNA class probability	0.932432

This structure is part of cluster 92734

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
ÆhL±?x
 Mean pairwise identity:  74.00
 Mean single sequence MFE: -35.17
 Consensus MFE: -20.27
 Energy contribution: -21.11
 Covariance contribution:   0.84
 Mean z-score:  -1.95
 Structure conservation index:   0.58
 SVM decision value:   1.22
 SVM RNA-class probability: 0.932432
 Prediction: RNA

######################################################################

>hg17.chr7/12674073-12673969
UUAUGCUUCAGGAGGCCCUUCCUGUGAACAUAAUGUCUGGCCUGUUAAACACAUAGCUGCCAAGACAGAGCCACAGGUGACCAUGACUUGGCAACUGAUAAAAC
....((((((((((....)))))).........((((((((..((((......)))).))).)))))))))..(((.((.(((.....))))).)))....... ( -29.30)
>mm5.chr12/80130823-80130927
CUCCGCUUCAGGAGGCUUUUCCUGUGAGCCUAAUGUCUGGCCUGCUGAGUGCAGAGCUGCCAAGGCAGAGCCACAGGUGGCCACGACUUGGCAAGUGAUAAAAC
...(((((((((((....))))))...(((....((((((((..(((.(.((....((((....)))).))).)))..))))).)))..))))))))....... ( -39.40)
>rn3.chr6/88576208-88576313
CUCUGCUUCAGGAGGCUCUUCCUUGUGAGCAUUUUGUCUGGCCUGCUGAGUGCAGAGCUGCCAAGGCAGAGCCACAGGUGGCCAUGACUUGGCAAGUGAUAAAAC
(((((((((((.(((((......((....))........))))).))))).)))))).(((((((.((..((((....))))..)).)))))))........... ( -44.04)
>canFam1.chr14/30211792-30211688
UUAGGCUUCAGGAGGCCCUUCCUGUGAACAGAAUGUCUGGUCUGUUAAAUACAGAGCUGCCAAAACAGAGCCACAGGUGGCCAUGACUUGGCAAGUGAUAAAAC
...(((((....)))))....(((....)))..((((.(.(((((.....))))).)((((((..((..((((....))))..))..))))))...)))).... ( -33.90)
>galGal2.chr2/26173522-26173403
CUGCAUUUUGGGAUGGUUUCUCAAAGGGAAAUAAUACUGUGAACAAAAUAUCUGGCUGAGUAACAAAAGGGCUGCCAAGUCUGAUCCACAGGUGAAGAACACUUGGCCAGCAACCAAAC
......(((((((((((((((.....)))))).....((....))...))))..((((.((.......(((((....)))))......((((((.....))))))))))))..))))). ( -29.20)
>consensus
CUACGCUUCAGGAGGCUCU_______________UCCU_GUGAACAUAAUGUCUGGCCUGCUAAAUACAGAGCUGCCAAGACAGAGCCACAGGUGGCCAUGACUUGGCAAGUGAUAAAAC
......(((((.(((((.....................................))))).)))))......(((((((((.((..((((....))))..)).)))))).)))........ (-20.27 = -21.11 +   0.84)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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