Structure #169756

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	+
Position	44,798,219 - 44,798,349
Number of sequences	5
Organisms	human, dog, mouse, rat, chicken
Mean pairwise identity	81.2
Columns	130
Mean single MFE	-46.2
Consensus MFE	-39.59
Combinations/base pair	46 / 36 = 1.28
SCI	0.86
z-score	-1.8
RNA class probability	0.874158

This structure is part of cluster 94271

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 130
 Columns: 130
 Strand: +
 Mean pairwise identity:  80.74
 Mean single sequence MFE: -46.20
 Consensus MFE: -39.59
 Energy contribution: -40.07
 Covariance contribution:   0.48
 Mean z-score:  -1.80
 Structure conservation index:   0.86
 SVM decision value:   0.94
 SVM RNA-class probability: 0.886535
 Prediction: RNA

######################################################################

>hg17.chr7/44798219-44798349
UGUCUGAAAUUUCUAUAACCUUGCUCUGGAUGGAGCAGGGCAAGGCCUCAAACCGUUUCAAAACUGUUCUAGCAAGCACUGAAGGAAUGCAUAGGGUCACCGCAGACCCAAGCACGCUGGAGGCUUGCUA
....((((((........((((((((((.......)))))))))).........)))))).........((((((((.((...((..(((...(((((......)))))..)))..))..)))))))))) ( -44.93)
>canFam1.chr16/3665862-3665989
UGUCUGAAAUUUCUAUAACCUCGCUCUGGAUGGAGCAGGGCAAGGCCUCAAACCGUCUCAGGAUGCUGUGGCAAGCGGUGCAGGAAUGCACAGGGUCACCGCAGACCCCAGCACGCUGGACGCUUGC
..................(((.(((((....))))))))((((((((.((...((((....)))).)).))).(((((((((....))))).(((((......))))).....)))).....))))) ( -45.70)
>mm5.chr11/6422824-6422954
UGUCUGAAAUUUCUAUAACCUUGCUCUGGAGAGGGCAGGGCAAGGCCUCAAACCACUUCAAAAUUGUUCUGGCAAGCACUGUAGGAAUGCACAGGGUCACUGCAGACCCAAGCACGCUGGAGGCUUGCUA
....((((..........((((((((((.......))))))))))...........)))).........((((((((.((.(((...(((...(((((......)))))..)))..))).)))))))))) ( -43.60)
>rn3.chr14/87315891-87316021
UGUCUGAAAUUUCUAUAACCUUGCUCUGGAGAGAGCAGGGCAAGGCCUCAAACCACUUCACAAUUGUUUUGGCAAGCACUGUAGGAAUGCACAGGGUCACGGCAGACCCAAGCACGCUGGAGGCUUGCUA
....((((..........((((((((((.......))))))))))...........)))).........((((((((.((.(((...(((...(((((......)))))..)))..))).)))))))))) ( -43.40)
>galGal2.chr2/144055746-144055622
UGUAUGGGGUUUCUAUAGCCUCCCCCUGAGAGACAGAAAGAGGCCUCAAACCACCCCAGGGCUGCUCUGGCAAGCGCUGCAGGAAUGGAUGGGGCCACGGCAGGCCCCACCAUGCUGGAAGCCU
....((((((.......(((((...(((.....)))...)))))........))))))(((((..((..((..((...))....((((.(((((((......)))))))))))))..))))))) ( -53.36)
>consensus
UGUCUGAAAUUUCUAUAACCUUGCUCUGGAGGGAGCAGGGCAAGGCCUCAAACCACUUCAAAACUGUUCUGGCAAGCACUGCAGGAAUGCACAGGGUCACCGCAGACCCAAGCACGCUGGAGGCUUGCUA
....((((((........((((((((((.......)))))))))).........))))))..........(((((((.((.(((...(((...(((((......)))))..)))..))).))))))))). (-39.59 = -40.07 +   0.48) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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