Structure #170230

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	+
Position	61,948,610 - 61,948,729
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	87.68
Columns	120
Mean single MFE	-37.62
Consensus MFE	-28.39
Combinations/base pair	38 / 32 = 1.19
SCI	0.75
z-score	-2.94
RNA class probability	0.970281

This structure is part of cluster 94490

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  87.68
 Mean single sequence MFE: -37.61
 Consensus MFE: -28.39
 Energy contribution: -29.26
 Covariance contribution:   0.87
 Mean z-score:  -2.94
 Structure conservation index:   0.75
 SVM decision value:   1.66
 SVM RNA-class probability: 0.970281
 Prediction: RNA

######################################################################

>hg17.chr7/61948610-61948729
ACCAAAGUCUUCUUUCUGCCCAGCAAGUAAAGCAAACAGGGCCACUCACUAACCCCAGCCCUGGCCUCUGGUGCCAUCUCUCGGCCACCAGCUAGCCAAGUGGCCUUUCACAGGCUAAU
.................(((..((.......))....(((((((((...............((((..((((((((.......)).))))))...))))))))))))).....))).... ( -34.66)
>mm5.chr14/55314681-55314800
ACCAAAGUCCCCUUUCCUCCCAACAAGGAGAGCAAACAGGGCUACUCACUAAUCCCAACCCUGGCCUCCAGGGCCGUUUCUCGGCAACCAGUCUGCCAAGUGGCCUUUCACAGGCCAAU
.....(((((..(((.(((((.....)).))).)))..)))))..................((((((..(((((((...((.((((.......)))).)))))))))....)))))).. ( -37.20)
>rn3.chr15/42612677-42612796
ACCAAAGUCCCCUUUCCUCCCAACAAGGAGAGCAAACAGGGCUACUCACUAAUCCCAACCCUGGCCUCCAGGGCCGUUUCUCGGCAACCAGUCUGCCAAGUGGCUUUUCACAGGCCAAU
.....(((((..(((.(((((.....)).))).)))..)))))..................((((((..(((((((...((.((((.......)))).)))))))))....)))))).. ( -34.40)
>canFam1.chr25/29285667-29285786
ACCAAAGUCCUCUUUCCUUCCAGCAAGGAGAGCAAACAGGGCCACUCGCUAAUCCCAGCCCUGGCCUCUGGGGCCGUCUCUCGGCAACGGGCCCACCAAGUGGCCUUUCACAGGCCAAU
...........((((((((.....))))))))....((((((((...(((......)))..))))).)))(((((......((....)))))))......((((((.....)))))).. ( -44.20)
>consensus
ACCAAAGUCCCCUUUCCUCCCAACAAGGAGAGCAAACA_GGGCCACUCACUAAUCCCAACCCUGGCCUCCAGGGCCGUCUCUCGGCAACCAGCCUGCCAAGUGGCCUUUCACAGGCCAAU
......((...(((((((.......)))))))...))..((((...............))))((((((..(((((((...((.((((.......)))).)))))))))....)))))).. (-28.39 = -29.26 +   0.87)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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