Structure #170234

Summary

Genome/Assembly hg17
Chromosome/Contig chr7
Strand -
Position 61,948,610 - 61,948,729
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 87.68
Columns 120
Mean single MFE -47.85
Consensus MFE -37.33
Combinations/base pair 47 / 37 = 1.27
SCI 0.78
z-score -2.06
RNA class probability 0.881409

This structure is part of cluster 94490

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  87.68
 Mean single sequence MFE: -47.85
 Consensus MFE: -37.33
 Energy contribution: -36.57
 Covariance contribution:  -0.75
 Mean z-score:  -2.06
 Structure conservation index:   0.78
 SVM decision value:   0.92
 SVM RNA-class probability: 0.881409
 Prediction: RNA

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>hg17.chr7/61948729-61948610
AUUAGCCUGUGAAAGGCCACUUGGCUAGCUGGUGGCCGAGAGAUGGCACCAGAGGCCAGGGCUGGGGUUAGUGAGUGGCCCUGUUUGCUUUACUUGCUGGGCAGAAAGAAGACUUUGGU
....((((.....))))..(((((((..((((((.(((.....))))))))).)))))))((..(((((..(.....((((.((..(.....)..)).)))).....)..)))))..)) ( -45.70)
>mm5.chr14/55314800-55314681
AUUGGCCUGUGAAAGGCCACUUGGCAGACUGGUUGCCGAGAAACGGCCCUGGAGGCCAGGGUUGGGAUUAGUGAGUAGCCCUGUUUGCUCUCCUUGUUGGGAGGAAAGGGGACUUUGGU
..((((((.....))))))...(((((((.((((((((..((.(((((((((...)))))))))...))..)).))))))..)))))))(((((....))))).((((....))))... ( -52.90)
>rn3.chr15/42612796-42612677
AUUGGCCUGUGAAAAGCCACUUGGCAGACUGGUUGCCGAGAAACGGCCCUGGAGGCCAGGGUUGGGAUUAGUGAGUAGCCCUGUUUGCUCUCCUUGUUGGGAGGAAAGGGGACUUUGGU
..((((.(.....).))))...(((((((.((((((((..((.(((((((((...)))))))))...))..)).))))))..)))))))(((((....))))).((((....))))... ( -46.40)
>canFam1.chr25/29285786-29285667
AUUGGCCUGUGAAAGGCCACUUGGUGGGCCCGUUGCCGAGAGACGGCCCCAGAGGCCAGGGCUGGGAUUAGCGAGUGGCCCUGUUUGCUCUCCUUGCUGGAAGGAAAGAGGACUUUGGU
....(((.......(((((((((.(((.((((..((((.....)((((.....))))..))))))).))).)))))))))..(((..((.(((((.....))))).))..)))...))) ( -46.40)
>consensus
AUUGGCCUGUGAAAGGCCACUUGGCAGACUGGUUGCCGAGAAACGGCCCCAGAGGCCAGGGCUGGGAUUAGUGAGUAGCCC_UGUUUGCUCUCCUUGCUGGGAGGAAAGAGGACUUUGGU
..((((((.((...((((.((((((((.....))))))))....)))).)).))))))((((((...........))))))..((((.((.(((((.....))))).)).))))...... (-37.33 = -36.57 +  -0.75) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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