Structure #170235
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr7 |
| Strand | + |
| Position | 61,948,649 - 61,948,741 |
| Number of sequences | 4 |
| Organisms | human, mouse, rat, dog |
| Mean pairwise identity | 86.74 |
| Columns | 93 |
| Mean single MFE | -34.18 |
| Consensus MFE | -23.67 |
| Combinations/base pair | 24 / 19 = 1.26 |
| SCI | 0.69 |
| z-score | -2.69 |
| RNA class probability | 0.924065 |
This structure is part of cluster 94490
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 93 Columns: 93 Strand: + Mean pairwise identity: 86.74 Mean single sequence MFE: -34.18 Consensus MFE: -23.67 Energy contribution: -23.30 Covariance contribution: -0.37 Mean z-score: -2.69 Structure conservation index: 0.69 SVM decision value: 1.16 SVM RNA-class probability: 0.924065 Prediction: RNA ###################################################################### >hg17.chr7/61948649-61948741 GGCCACUCACUAACCCCAGCCCUGGCCUCUGGUGCCAUCUCUCGGCCACCAGCUAGCCAAGUGGCCUUUCACAGGCUAAUCAGUGAGCAUCC ((...((((((...........((((..((((((((.......)).))))))...))))..((((((.....))))))...))))))...)) ( -32.20) >mm5.chr14/55314720-55314813 GGCUACUCACUAAUCCCAACCCUGGCCUCCAGGGCCGUUUCUCGGCAACCAGUCUGCCAAGUGGCCUUUCACAGGCCAAUCAAUGAGGCAGCC ((((.((((..........((((((...)))))).........((((.......))))...((((((.....)))))).....))))..)))) ( -33.20) >rn3.chr15/42612716-42612809 GGCUACUCACUAAUCCCAACCCUGGCCUCCAGGGCCGUUUCUCGGCAACCAGUCUGCCAAGUGGCUUUUCACAGGCCAAUCAAUGAGGCAGCC ((((.((((..........((((((...)))))).........((((.......))))...((((((.....)))))).....))))..)))) ( -30.50) >canFam1.chr25/29285706-29285799 GGCCACUCGCUAAUCCCAGCCCUGGCCUCUGGGGCCGUCUCUCGGCAACGGGCCCACCAAGUGGCCUUUCACAGGCCAAUCAAUGGGGCAGCC (((((...(((......)))..))))).(((..((((.....))))..)))((((......((((((.....)))))).......)))).... ( -40.82) >consensus GGCCACUCACUAAUCCCAACCCUGGCCUCCAGGGCCGUCUCUCGGCAACCAGCCUGCCAAGUGGCCUUUCACAGGCCAAUCAAUGAGGCAGCC (((((.................)))))......((((.....)))).....((((......((((((.....)))))).......)))).... (-23.67 = -23.30 + -0.37)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
