Structure #170306

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	+
Position	62,836,869 - 62,836,971
Number of sequences	4
Organisms	human, dog, mouse, rat
Mean pairwise identity	76.18
Columns	120
Mean single MFE	-45.67
Consensus MFE	-26.29
Combinations/base pair	37 / 31 = 1.19
SCI	0.58
z-score	-2.6
RNA class probability	0.991971

This structure is part of cluster 94521

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  76.18
 Mean single sequence MFE: -45.67
 Consensus MFE: -26.29
 Energy contribution: -28.10
 Covariance contribution:   1.81
 Mean z-score:  -2.60
 Structure conservation index:   0.58
 SVM decision value:   2.30
 SVM RNA-class probability: 0.991971
 Prediction: RNA

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>hg17.chr7/62836869-62836971
UCCUCGAGCCUGUCGCCCUGGCCCAGUCCCAGUCCACUGCCUUCCACCCUGCCCUGGGCUACCACAGCUGCCUCCAGGCCUCGGCCUGGUUUCACCGCAUUC
.......((((((.(...((((((((...(((................)))..))))))))).)))).((...((((((....))))))...))..)).... ( -29.69)
>canFam1.chr26/32022066-32022185
UCCACGGCCCUGUAGCCAUGGCCCGGUCCCAGCCCGGUGCCUUCCACCCUGGGCAGCAGGGGCACCUGCUCCAGCCUACCACAGCUGCCUCCGGGCCUCAGCCUGGCCUCACCGCAUUC
.....((((.....((...(((((((...((((..((((.....)))).(((((((((((....))))))...))))).....))))...)))))))...))..))))........... ( -51.40)
>mm5.chr16/81099618-81099499
UCAUGGCCUUGGAGCCAUGGUCAGGUCACAGUCCGGUGCCUUCCACCCCCUAUGGCAAGGGCGCCCUGCCUUGGCCUACCACAGCUGCCUCCAGGCUUAGACCUGGCUUCACCGCAUUC
.....((..((((((((.((((((((((..((..(((((((((((.......)))..))))))))..))..)))))).........(((....)))...))))))))))))..)).... ( -50.40)
>rn3.chr11/85087261-85087380
CCAUGGCCUUGGAGCCAUGGUCAGGUCACAGUCCGGUGCCUUCCACCCCCUAUGGCAAGGGCGCCCUGCCCUGGCCUACCACAGCUGCCUCUGGGCUUCGGCCUGGCUUCACCGCAUUC
.....((..((((((((((((.((((((..((..(((((((((((.......)))..))))))))..))..))))))))))(((......)))(((....)))))))))))..)).... ( -51.20)
>consensus
UCAU_GGCCCUGGAGCCAUGGCCAGGUCACAGUCCGGUGCCUUCCACCCCCUAUGGCAAGGGC_CCCUGCCCUGGCCUACCACAGCUGCCUCCAGGCCUCGGCCUGGCUUCACCGCAUUC
......((..((((((((.((((.(((...((.((((.((......(((..........)))......)).)))).)))))......(((....)))...))))))))))))..)).... (-26.29 = -28.10 +   1.81)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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