Structure #171011

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	-
Position	72,754,079 - 72,754,198
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	77.44
Columns	120
Mean single MFE	-55.07
Consensus MFE	-41.36
Combinations/base pair	55 / 43 = 1.28
SCI	0.75
z-score	-1.98
RNA class probability	0.958662

This structure is part of cluster 94898

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  77.44
 Mean single sequence MFE: -55.07
 Consensus MFE: -41.36
 Energy contribution: -42.30
 Covariance contribution:   0.94
 Mean z-score:  -1.98
 Structure conservation index:   0.75
 SVM decision value:   1.48
 SVM RNA-class probability: 0.958662
 Prediction: RNA

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>hg17.chr7/72754198-72754079
GUGCAGGGCGCGGGCGCAGGCAACAGGCCAGGAGGUCCUGGGGCCUGAGGUCUCCAUUCCCACUGACAUCAGUGCAAGGUGUCAGGGGGCCUGAAUCAUCGGGGCUGGGGCCAGCCCCC
.....(((((.((((.(((((..((((((....)).))))..)))))..)))).)...(((.((((((((.......)))))))))))))))........(((((((....))))))). ( -64.20)
>mm5.chr5/16901984-16902103
GUGCAGGGUUCGGGCAUGGGGCCAUGGGCCAGAAGGUCACAGAUCCCAGGGCUUCGGUUCCCACUGACAUUGAUGUAGGUGUCAGGAGACCUGAAUCAUCCAGACUGUGGCCAGCCCCC
...........((((....((((...))))....((((((((.((...(((.(((((.((.(.((((((((......))))))))).)).)))))...))).)))))))))).)))).. ( -46.40)
>rn3.chr12/22765294-22765175
GUGCAGGGUAUGGGCGUGGGGUCAUGGACCACAAGGUCACCGAGCCCAAGGCUUCGGUCCCCACUGACAUCAAUGUAGGUGUCAGGAGACCUGAAUCAUCCAGGCUAGGGCCAGCCCCC
.....((((...(((.(((((.....((((....))))((((((((...))).))))))))))((((((((......)))))))).((.((((.......))))))...))).)))).. ( -51.60)
>canFam1.chr6/69923911-69924030
GUGCAAGGCGCGGGCUCAGGCGACAAGCCAGAAAGUCCUGGGGCCUGAGGCCUCAGUUCCCAGUGACAUCAGUGCAAGGUGUCAGGGGGCCUGAAUCAUCGGGGCCAGGGCCAGCCCCC
((((...))))(((((..(((.....))).....((((((.(.(((((....((((..(((..(((((((.......))))))).)))..))))....))))).))))))).))))).. ( -58.10)
>consensus
GUGCAGGGCGCGGGCGCAGG_CCACAGGCCAGAAGGUCACGGAGCCCAAGGCCUCGGUUCCCACUGACAUCAAUGCA_GGUGUCAGGAGACCUGAAUCAUCCAGGCUAGGGCCAGCCCCC
((((...))))((((.((((....((((((....)))).))...)))).(((((((((.(((.((((((((.......))))))))))).(((((....)))))))))))))).)))).. (-41.36 = -42.30 +   0.94)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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