Structure #171020

Summary

Genome/Assembly hg17
Chromosome/Contig chr7
Strand -
Position 72,754,119 - 72,754,238
Number of sequences 4
Organisms human, mouse, rat, dog
Mean pairwise identity 74.09
Columns 120
Mean single MFE -51.15
Consensus MFE -37.65
Combinations/base pair 45 / 32 = 1.41
SCI 0.74
z-score -2
RNA class probability 0.988917

This structure is part of cluster 94898

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  74.09
 Mean single sequence MFE: -51.15
 Consensus MFE: -37.65
 Energy contribution: -36.15
 Covariance contribution:  -1.50
 Mean z-score:  -2.00
 Structure conservation index:   0.74
 SVM decision value:   2.14
 SVM RNA-class probability: 0.988917
 Prediction: RNA

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>hg17.chr7/72754238-72754119
AUGGGAAGGUCACGAGAGGCACGAGCCGGGGCCAACCCCCGUGCAGGGCGCGGGCGCAGGCAACAGGCCAGGAGGUCCUGGGGCCUGAGGUCUCCAUUCCCACUGACAUCAGUGCAAGG
..(((((..........(((....)))((((((....(((((((...)))))))..(((((..((((((....)).))))..))))).)))).)).)))))((((....))))...... ( -56.30)
>mm5.chr5/16902024-16902143
AUGGGAAGUAUAUAAGAGGCAUGAUCCGAGGCCAAGGCCUGUGCAGGGUUCGGGCAUGGGGCCAUGGGCCAGAAGGUCACAGAUCCCAGGGCUUCGGUUCCCACUGACAUUGAUGUAGG
.((((((((.........)).....((((((((...(((((.((...)).))))).((((..(.((((((....)))).)))..)))).))))))))))))))(((.((....))))). ( -44.10)
>rn3.chr12/22765333-22765215
AUGGGAAGUACAUAAGGGGCAUGGUCUGAGGCCAAGACCGUGCAGGGUAUGGGCGUGGGGUCAUGGACCACAAGGUCACCGAGCCCAAGGCUUCGGUCCCCACUGACAUCAAUGUAGG
.(((...(..((((....(((((((((.......)))))))))....))))..)((((((.....((((....))))((((((((...))).))))))))))).....)))....... ( -48.30)
>canFam1.chr6/69923951-69924070
AUGGGAAGGUCACGAGAGGCACGAGCCGGGGCCAAGCCCCGUGCAAGGCGCGGGCUCAGGCGACAAGCCAGAAAGUCCUGGGGCCUGAGGCCUCAGUUCCCAGUGACAUCAGUGCAAGG
............(....)((((((((((((((...)))))((((...)))).))))).(((.....))).....((((((((..((((....))))..))))).)))....)))).... ( -55.90)
>consensus
AUGGGAAGGACACAAGAGGCACGAGCCGAGGCCAAGCCCCGUGCAGGGCGCGGGCGCAGG_CCACAGGCCAGAAGGUCACGGAGCCCAAGGCCUCGGUUCCCACUGACAUCAAUGCA_GG
.((((((..........(((....)))((((((....(((((((...)))))))..((((....((((((....)))).))...)))).))))))..))))))................. (-37.65 = -36.15 +  -1.50) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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