Structure #171039
Summary
Genome/Assembly | hg17 |
Chromosome/Contig | chr7 |
Strand | - |
Position | 72,754,198 - 72,754,318 |
Number of sequences | 4 |
Organisms | human, mouse, rat, dog |
Mean pairwise identity | 68.61 |
Columns | 120 |
Mean single MFE | -48.58 |
Consensus MFE | -24.01 |
Combinations/base pair | 31 / 24 = 1.29 |
SCI | 0.49 |
z-score | -1.79 |
RNA class probability | 0.757058 |
This structure is part of cluster 94898
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 4 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 68.61 Mean single sequence MFE: -48.58 Consensus MFE: -24.01 Energy contribution: -24.45 Covariance contribution: 0.44 Mean z-score: -1.79 Structure conservation index: 0.49 SVM decision value: 0.49 SVM RNA-class probability: 0.757057 Prediction: RNA ###################################################################### >hg17.chr7/72754318-72754198 GUUUGGGCAGCUCUCAGAAAGGGGACAGCAUGAGGGAGAGGCCGUCUGGCCUGGCCUCGUUUCCCAGCCAGGCCCCAUCCAUGGGAAGGUCACGAGAGGCACGAGCCGGGGCCAACCCCC .((((((.....))))))..((((.........(((((((((((.......)))))))...)))).....((((((.(((...)))...........(((....)))))))))..)))). ( -49.40) >mm5.chr5/16902103-16902222 GCCAGGGCAGCUCCCAGUGAGGGGACACACGAAGCAGAGGUUGUCAGCCUUGGCUCAGUCUCCAGGCUAGCCCUUUUCCAUGGGAAGUAUAUAAGAGGCAUGAUCCGAGGCCAAGGCCU (((..((((((..(..(((.(....).)))......)..)))))).(((((((.((((((((...(((..(((........))).)))......))))).))).)))))))...))).. ( -45.50) >rn3.chr12/22765404-22765293 GUCCCCAGUGAGGGGACAACAUGAGGCCGAGGUUGUCAGCCUUGGCUCAAUCUCCAGGCUAGCCCUUUUCCAUGGGAAGUACAUAAGGGGCAUGGUCUGAGGCCAAGACC ((((((.....)))))).......(((((((((((..(((....))))))))))((((((((((((((...(((.......)))))))))).))))))).))))...... ( -52.40) >canFam1.chr6/69924030-69924135 GUUCAGGCAGCUCUCAGAAAGGGGACAGUGUGAGGGAGAGGCUGUCUGGCCUGGCCUCCUCGUCCAUGGGAAGGUCACGAGAGGCACGAGCCGGGGCCAAGCCCC ....((((((((((((.(..(....)..).)))).....))))))))(((.((((((((((((((.......))..))))).(((....)))))))))).))).. ( -47.00) >consensus GUC_GGGCAGCUCCCAGAAAGGGGACAGCAUGAGGCAGAGGCUGUCAGCCCUGGCCCAGUCUCCAGGCUAGCCCUCUUCCAUGGGAAGGACACAAGAGGCACGAGCCGAGGCCAAGCCCC ............(((.....)))((((((...........)))))).(((((((((................(((.......)))............(((....)))..))))))))).. (-24.01 = -24.45 + 0.44)