Structure #171044

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	-
Position	72,754,238 - 72,754,358
Number of sequences	3
Organisms	human, mouse, dog
Mean pairwise identity	59.33
Columns	120
Mean single MFE	-47.73
Consensus MFE	-22.22
Combinations/base pair	32 / 26 = 1.23
SCI	0.47
z-score	-1.58
RNA class probability	0.695603

This structure is part of cluster 94898

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 3
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  59.33
 Mean single sequence MFE: -47.73
 Consensus MFE: -22.22
 Energy contribution: -23.87
 Covariance contribution:   1.65
 Mean z-score:  -1.58
 Structure conservation index:   0.47
 SVM decision value:   0.34
 SVM RNA-class probability: 0.695603
 Prediction: RNA

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>hg17.chr7/72754358-72754238
UCCUCGAAACCCAAGGAGGCCAAGGGACGGCCCGGCGCCAGUUUGGGCAGCUCUCAGAAAGGGGACAGCAUGAGGGAGAGGCCGUCUGGCCUGGCCUCGUUUCCCAGCCAGGCCCCAUCC
((((.(.....).))))((.....(((((((((...(((......)))..((((((....(....)....)))))).).))))))))((((((((...........)))))))))).... ( -50.90)
>mm5.chr5/16902143-16902234
UGCUCGGCGCCAGCCAGGGCAGCUCCCAGUGAGGGGACACACGAAGCAGAGGUUGUCAGCCUUGGCUCAGUCUCCAGGCUAGCCCUUUUCC
((((((((....))).)))))(((....(((.(....).)))..))).(((((.....)))))((((.((((....))))))))....... ( -33.80)
>canFam1.chr6/69924070-69924174
UCCUCGAAACCCGAGGAGGCCGGGGACGUCCCGGCGCCAGUUCAGGCAGCUCUCAGAAAGGGGACAGUGUGAGGGAGAGGCUGUCUGGCCUGGCCUCCUCGUCC
...........(((((((((((((.....))))))(((((..(((((((((((((.(..(....)..).)))).....)))))))))..))))))))))))... ( -58.50)
>consensus
UCCUCGAAACCC_AGGAGGCC__GGGACGGCCCGGCGCCAGUUAGGGCAGCUCUCAGAAAGGGGACAGCAUGAGGGAGAGGCUGUCUGGCCUGGCCU_GU_UCC__GC_AG_CCUCAUCC
((((((.....))))))................((.(((((..((((((((((((.....(....).........)))).))))))))..)))))))....................... (-22.22 = -23.87 +   1.65)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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