Structure #171057

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	+
Position	72,754,318 - 72,754,438
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	72.17
Columns	120
Mean single MFE	-37.5
Consensus MFE	-23.11
Combinations/base pair	26 / 23 = 1.13
SCI	0.62
z-score	-1.57
RNA class probability	0.720433

This structure is part of cluster 94898

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  72.17
 Mean single sequence MFE: -37.50
 Consensus MFE: -23.11
 Energy contribution: -22.67
 Covariance contribution:  -0.44
 Mean z-score:  -1.57
 Structure conservation index:   0.62
 SVM decision value:   0.40
 SVM RNA-class probability: 0.720433
 Prediction: RNA

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>hg17.chr7/72754318-72754438
UGGCGCCGGGCCGUCCCUUGGCCUCCUUGGGUUUCGAGGACUCAUUCUAAAAUUAAUUUGGGGGAAUUCAGGGAAUUUGUGAGCAAGUUCCCAGAGAACUGUGGCUGCCCUGGGGGCAAG
....(((((((((.....))))))(((.((((.(((((..(((.(((((((.....))))))).......(((((((((....))))))))).)))..)).)))..)))).))))))... ( -47.10)
>mm5.chr5/16902314-16902222
UGGCGCCGAGCACCAGUUCUAAAAUUAAUAUGAGGGAAUUUAGGGAAUUUGAGAAUGAGUUCCCAGACAGCCAUGGCUGCCCCAGGGACAAG
(((.((...)).)))(((((..........((.(((......((((((((......))))))))...((((....))))))))))))))... ( -28.00)
>rn3.chr12/22765404-22765496
UGGCGCCGAGCAGCAGUUCUAAAAUUAAUAUGAGGGAAUUUAGGGAAUUUGAGUGUGAGUUCCCAGACAGCCAUGGCUGCCCCAGGGACAAG
((...((((((....))))...........((.(((......((((((((......))))))))...((((....))))))))).)).)).. ( -26.90)
>canFam1.chr6/69924254-69924135
UGGCGCCGGGACGUCCCCGGCCUCCUCGGGUUUCGAGGACUCGUUCUAAAAUUAAUAUGGGGGAAUUCGGGGAAUUUGUGAGCAAGUUCCCAGAGAACUGUGGCUGCCCCAGGGGCAAG
.(((((((((.....)))))).((((((.....))))))((((((((...((....))...)))))...(((((((((....))))))))).))).......)))((((...))))... ( -48.00)
>consensus
UGGCGCCGAGC____________________________ACCAGUUCUAAAAUUAAUAUGAGGGAAUUCAGGGAAUUUGAGAGCAAGUUCCCAGACAACCAUGGCUGCCCCAGGGACAAG
.(((((((...................................(((((...((....))...)))))...(((((((((....))))))))).........)))).)))........... (-23.11 = -22.67 +  -0.44)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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