Structure #171067

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	+
Position	72,754,358 - 72,754,449
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	84.98
Columns	91
Mean single MFE	-31.4
Consensus MFE	-26.42
Combinations/base pair	28 / 23 = 1.22
SCI	0.84
z-score	-2.48
RNA class probability	0.982004

This structure is part of cluster 94898

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 91
 Columns: 91
 Strand: +
 Mean pairwise identity:  84.98
 Mean single sequence MFE: -31.40
 Consensus MFE: -26.42
 Energy contribution: -26.55
 Covariance contribution:   0.13
 Mean z-score:  -2.48
 Structure conservation index:   0.84
 SVM decision value:   1.90
 SVM RNA-class probability: 0.982004
 Prediction: RNA

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>hg17.chr7/72754358-72754449
CUCAUUCUAAAAUUAAUUUGGGGGAAUUCAGGGAAUUUGUGAGCAAGUUCCCAGAGAACUGUGGCUGCCCUGGGGGCAAGUGUCUCUCCUU
......(((((.....)))))((((.....(((((((((....))))))))).(((((((...(((.(....).))).))).)))))))). ( -30.30)
>mm5.chr5/16902325-16902234
CCAGUUCUAAAAUUAAUAUGAGGGAAUUUAGGGAAUUUGAGAAUGAGUUCCCAGACAGCCAUGGCUGCCCCAGGGACAAGGGUCCCUGCUU
.....................(((......((((((((......))))))))...((((....)))))))(((((((....)))))))... ( -32.40)
>rn3.chr12/22765416-22765507
GCAGUUCUAAAAUUAAUAUGAGGGAAUUUAGGGAAUUUGAGUGUGAGUUCCCAGACAGCCAUGGCUGCCCCAGGGACAAGGGUCCCUGCUU
((...................(((......((((((((......))))))))...((((....)))).)))((((((....)))))))).. ( -32.80)
>canFam1.chr6/69924265-69924174
CUCGUUCUAAAAUUAAUAUGGGGGAAUUCGGGGAAUUUGUGAGCAAGUUCCCAGAGAACUGUGGCUGCCCCAGGGGCAAGUGUCCCUGCUU
....................((((..(((.(((((((((....)))))))))...))).........))))((((((....)))))).... ( -30.10)
>consensus
CCAGUUCUAAAAUUAAUAUGAGGGAAUUCAGGGAAUUUGAGAGCAAGUUCCCAGACAACCAUGGCUGCCCCAGGGACAAGGGUCCCUGCUU
.....................(((......(((((((((....)))))))))...((((....)))))))(((((((....)))))))... (-26.42 = -26.55 +   0.13) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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