Structure #171071

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	-
Position	72,754,358 - 72,754,449
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	84.98
Columns	91
Mean single MFE	-25.12
Consensus MFE	-17.48
Combinations/base pair	23 / 22 = 1.05
SCI	0.7
z-score	-2.05
RNA class probability	0.831573

This structure is part of cluster 94898

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 91
 Columns: 91
 Strand: +
 Mean pairwise identity:  84.98
 Mean single sequence MFE: -25.12
 Consensus MFE: -17.48
 Energy contribution: -19.98
 Covariance contribution:   2.50
 Mean z-score:  -2.05
 Structure conservation index:   0.70
 SVM decision value:   0.72
 SVM RNA-class probability: 0.831573
 Prediction: RNA

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>hg17.chr7/72754449-72754358
AAGGAGAGACACUUGCCCCCAGGGCAGCCACAGUUCUCUGGGAACUUGCUCACAAAUUCCCUGAAUUCCCCCAAAUUAAUUUUAGAAUGAG
..(((((((.((((((((...))))).....))))))))(((((.(((....))).))))).........))................... ( -22.30)
>mm5.chr5/16902234-16902325
AAGCAGGGACCCUUGUCCCUGGGGCAGCCAUGGCUGUCUGGGAACUCAUUCUCAAAUUCCCUAAAUUCCCUCAUAUUAAUUUUAGAACUGG
...(((((((....)))))))(((((((....)))))))(((((............))))).............................. ( -28.20)
>rn3.chr12/22765507-22765416
AAGCAGGGACCCUUGUCCCUGGGGCAGCCAUGGCUGUCUGGGAACUCACACUCAAAUUCCCUAAAUUCCCUCAUAUUAAUUUUAGAACUGC
...(((((((....)))))))(((((((....)))))))(((((............))))).............................. ( -28.20)
>canFam1.chr6/69924174-69924265
AAGCAGGGACACUUGCCCCUGGGGCAGCCACAGUUCUCUGGGAACUUGCUCACAAAUUCCCCGAAUUCCCCCAUAUUAAUUUUAGAACGAG
.....((((...((((((...)))))).........((.(((((.(((....))).))))).))..))))..................... ( -21.80)
>consensus
AAGCAGGGACACUUGCCCCUGGGGCAGCCACAGCUCUCUGGGAACUCACUCACAAAUUCCCUAAAUUCCCCCAUAUUAAUUUUAGAACGAG
...(((((((....)))))))(((((((....)))))))(((((.(((....))).))))).............................. (-17.48 = -19.98 +   2.50) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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