Structure #172586

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	+
Position	99,922,214 - 99,922,311
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	82.14
Columns	120
Mean single MFE	-41.2
Consensus MFE	-27.08
Combinations/base pair	32 / 29 = 1.10
SCI	0.66
z-score	-2.4
RNA class probability	0.945975

This structure is part of cluster 95767

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  82.14
 Mean single sequence MFE: -41.20
 Consensus MFE: -27.08
 Energy contribution: -29.82
 Covariance contribution:   2.75
 Mean z-score:  -2.40
 Structure conservation index:   0.66
 SVM decision value:   1.34
 SVM RNA-class probability: 0.945975
 Prediction: RNA

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>hg17.chr7/99922214-99922311
AUUCAGUCACAACAGGAGUCUCCCCCACACCUGGCAAGAGGGAAGGGGAGCUGGGGGCCAGCAGCAGCAAACACUCCCCCCGGCCCGUCACCCCUUA
............((((.((.......)).))))....(((((..((((.((((((((...((....))........)))))))))).))..))))). ( -31.60)
>mm5.chr5/14302727-14302610
AUUCAGUCACAACAGGAGUCUCUCCCAUCCCUCCAAUGCCACCACAAUGGCAAGAGGGAAAGGGAGCUGGGGGGCCAGCAGCAGCAAGACGUUUCCCCCUGGCCCAUCACCCCCUUA
..............((((...))))..((((((...(((((......))))).))))))(((((.(.((..(((((((..(.(((.....))).)...)))))))..)).)))))). ( -43.70)
>rn3.chr12/27063081-27062964
AUUCAGUCACAACAGGAGUCUCUCCCACCCCUCCAAUGCCACCACAGUGGCAAGAGGGAAGGGGAGCUGGGGGGCCAGCAGCAGCAAGACAUUUCCCCCUGGCCCAUCACCCCCUUA
..............((((...))))...(((((...((((((....)))))).)))))((((((.(.((..(((((((....................)))))))..))))))))). ( -45.75)
>canFam1.chr6/67352099-67351980
AUUCAGUCACAACAGUAUCCCCCCCACACCUCUACUGCCGCCAAAUACUGGCGUGAGGAAGGGGGGAGCUGGGGGGCCAGCAGCAGCAAGACAUUUCCCCCUGGCCCAUCACCCCCUUA
............((((.(((((((....((((......(((((.....))))).))))..)))))))))))..(((((((....................)))))))............ ( -43.75)
>consensus
AUUCAGUCACAACAGGAGUCUCCCCCACACCUCCAAUGCCACC__ACA_UGGCAAGAGGGA_AGGGGAGCUGGGGGGCCAGCAGCAGCAAGACAUUUCCCCCUGGCCCAUCACCCCCUUA
.............(((....(((((...(((((...(((((........))))).)))))...)))))(((((((((...((....)).........))))))))).........))).. (-27.08 = -29.82 +   2.75)

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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