Structure #172638

Summary

Genome/Assembly hg17
Chromosome/Contig chr7
Strand +
Position 101,021,478 - 101,021,586
Number of sequences 5
Organisms human, dog, mouse, rat, chicken
Mean pairwise identity 77.81
Columns 120
Mean single MFE -38.69
Consensus MFE -23.12
Combinations/base pair 39 / 31 = 1.26
SCI 0.6
z-score -2.79
RNA class probability 0.996624

This structure is part of cluster 95813

Alignment

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 5
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  77.81
 Mean single sequence MFE: -38.69
 Consensus MFE: -23.12
 Energy contribution: -24.00
 Covariance contribution:   0.88
 Mean z-score:  -2.79
 Structure conservation index:   0.60
 SVM decision value:   2.72
 SVM RNA-class probability: 0.996624
 Prediction: RNA

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>hg17.chr7/101021478-101021586
CCCAGCAGGCAAUGACAUCUGGUAACCCCAUUGUCUGCUAUCUGCAGGGAAGAAAGUGUUAGACACGAGGGCAGAUGGAGUUUGCCUAACGUGUCUGUUCUCUUCUUU
(((.(((((((..((((..(((.....))).)))))))...)))).)))(((((((...((((((((.((((((((...))))))))..))))))))..)).))))). ( -40.60)
>canFam1.chr6/68165203-68165094
CCAAGCAGGCAAUGACAUCUGGUAACCCCAUUGUCUGCUAUCUGCAGGGAGAAAAGUGUUAGACUCGAGGGGCAGAUGGAGUUUGCCUAGCGUGUCUGUUCUCUUCUCU
...(((((((((((..............)))))))))))........((((((.((...(((((.((..((((((((...))))))))..)).)))))..)).)))))) ( -42.34)
>mm5.chr5/144-32
CCAAGCAGGCAAUGACAUCUGGUAAACUCAUUGUCUGCUAUUCUGUGGGGAAAGAAAAGUGUUAGACAGAGAAGCCAGAGGCAGUUUGCCUAACGUGUCUUCUCUCUUCUCU
...((((((((((((............)))))))))))).......((((((.((...((.....)).((((((.((.((((.....))))....)).)))))))))))))) ( -35.10)
>rn3.chr12/31-143
CCAAGCAGGCAAUGACAUCUGGUAAACCCAUUGUCUGCUAUUCUGUGGGGAAAGAAAAGUGUUAGACAGAGAAGCCAGAGGCAGUUUGCCUAACAUGUCUUCUCUCUUCUCU
...(((((((((((......((....))))))))))))).......(((..((((...(((((((.((((...(((...)))..)))).))))))).))))..)))...... ( -36.60)
>galGal2.chr19/3617459-3617579
CCAGGCAAACCAAGACAUCUGAUUAUGCCAUUGUAUCCUGUUUGGCAAAAGAGAGAGUGAAGGAAAGUGAUAGACAUGAGGGGCAGAUGGAGUUUGCCUAAUGUGUCUGUUCUUUUCUUC
...((((.....((....)).....))))......((((.(((....))).)).))..(((((((((.((((((((((..((((((((...))))))))..))))))))))))))))))) ( -38.80)
>consensus
CCAAGCAGGCAAUGACAUCUGGUAAACCCAUUGUCUGCUAUUCUGCAGGGAA________AGAAAAGUGUUAGACAGAGAGGGCAGAUGGAGUUUGCCUAACGUGUCUGUUCUCUUCUCU
...(((((((((((..............))))))))))).....(.((((((..................((((((....(((((((.....)))))))....)))))))))))).)... (-23.12 = -24.00 +   0.88) 

	

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Consensus structure

Secondary structure graph

Secondary structure

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Montain plot

Secondary structure

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Dotplot

Secondary structure

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