Structure #172645
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr7 |
| Strand | - |
| Position | 101,021,517 - 101,021,626 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 76.12 |
| Columns | 120 |
| Mean single MFE | -28.72 |
| Consensus MFE | -15.38 |
| Combinations/base pair | 36 / 30 = 1.20 |
| SCI | 0.54 |
| z-score | -2.21 |
| RNA class probability | 0.960622 |
This structure is part of cluster 95813
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 76.12 Mean single sequence MFE: -28.72 Consensus MFE: -15.38 Energy contribution: -16.34 Covariance contribution: 0.96 Mean z-score: -2.21 Structure conservation index: 0.54 SVM decision value: 1.50 SVM RNA-class probability: 0.960622 Prediction: RNA ###################################################################### >hg17.chr7/101021626-101021517 GCUAUUUUGCUGCAUUCCCAAGAAGAGUUGAAAAGGCAGCAAAGAAGAGAACAGACACGUUAGGCAAACUCCAUCUGCCCUCGUGUCUAACACUUUCUUCCCUGCAGA ((...((((((((.....(((......))).....))))))))(((((((..(((((((...((((.........))))..))))))).....)))))))...))... ( -33.80) >canFam1.chr6/68165133-68165243 GCUAUUUUGCUGCAUUCCCAAGAAAAGUUGAAAAGGCAGCAGAGAAGAGAACAGACACGCUAGGCAAACUCCAUCUGCCCCUCGAGUCUAACACUUUUCUCCCUGCAGA ((.....((((((.....(((......))).....))))))((((((((...((((.((...((((.........))))...)).))))....))))))))...))... ( -30.70) >mm5.chr5/72-180 GUUAUUUUGUUGCGUUCACAAGAACUGAAAAGGCAGAGAGAAGAGAGAAGACACGUUAGGCAAACUGCCUCUGGCUUCUCUGUCUAACACUUUUCUUUCCCCACAGAA ....((((((...((((....))))......((.((((((((((((((((...((..((((.....)))).)).)))))))(.....).))))))))).)).)))))) ( -29.40) >rn3.chr12/179-71 GUUAUUUUGUUGCGUUCACAAGAACUGAAAAGGCAGAGAGAAGAGAGAAGACAUGUUAGGCAAACUGCCUCUGGCUUCUCUGUCUAACACUUUUCUUUCCCCACAGAA ....((((((...((((....))))......((..((((((((((........(((((((((....(((...))).....))))))))))))))))))).)))))))) ( -29.40) >galGal2.chr19/3617614-3617499 GCUAUUUUGCUACAUUCUUAAAUUGAAAAGGCAGCGAAGAAAAGAACAGACACAUUAGGCAAACUCCAUCUGCCCCUCAUGUCUAUCACUUUCCUUCACUCUCUCUUUUGCCAAA ((......))...................(((((.((((.((((...(((((.....((((.........)))).....)))))....)))).)))).).........))))... ( -20.30) >consensus GCUAUUUUGCUGCAUUCACAAGAA___UUGAAAAGGCAGCAGAGAAGAGAACAGACACGUUAGGCAAACUCCAUCUGCCCUCCCUGUCUAACACUUUUCU________UUCCCUGCAGAA ((...((((((((.((..(((......)))..)).))))))))((((((...(((((.....((((.........)))).....)))))....))))))...............)).... (-15.38 = -16.34 + 0.96)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
