Structure #173573
Summary
| Genome/Assembly | hg17 |
| Chromosome/Contig | chr7 |
| Strand | + |
| Position | 115,002,715 - 115,002,822 |
| Number of sequences | 5 |
| Organisms | human, dog, mouse, rat, chicken |
| Mean pairwise identity | 78.7 |
| Columns | 120 |
| Mean single MFE | -28.59 |
| Consensus MFE | -20.84 |
| Combinations/base pair | 37 / 26 = 1.42 |
| SCI | 0.73 |
| z-score | -1.79 |
| RNA class probability | 0.876986 |
This structure is part of cluster 96359
Alignment
RNAz output
########################### RNAz 0.1.1 ############################# Sequences: 5 Slice: 1 to 120 Columns: 120 Strand: + Mean pairwise identity: 78.70 Mean single sequence MFE: -28.59 Consensus MFE: -20.84 Energy contribution: -19.64 Covariance contribution: -1.20 Mean z-score: -1.79 Structure conservation index: 0.73 SVM decision value: 0.90 SVM RNA-class probability: 0.876986 Prediction: RNA ###################################################################### >hg17.chr7/115002715-115002822 UUGUAACCCCACUGAAUUCUAUCCCUGAGAACAAAGGGUAAUUUCUGCUCAGCAAUCCUCAGUGGGUAUGUAAAUGAAUGCUGCUGAAAUAUUCAAAAGCUGAUACC ..(((..((((((((.......((((........)))).......(((...)))....)))))))).............(((..(((.....)))..)))...))). ( -24.20) >canFam1.chr14/57391252-57391359 UUGUAACCCCAUGGAAUUCUAUGCCUGAGAACAAAGAGUAAUUUCUGCUCAGCAAUCCUCAGUGGGUAUGUAAAUGAAUGCUGCUGAAAUAUUCAGAAGCUGAUACC ..((((((((((((....))))).(((((......(((((.....))))).......))))).))))............(((.((((.....)))).)))...))). ( -25.42) >mm5.chr6/16441607-16441714 UUGUAGCCCCACUGAAUUCUGUGCCUGAGAACAAAGGCUAAUUUCUGCUCAGAAAUCCUCAGUGGGUAUGCAAAUGAAGGCCACUGAAAUAUUCAGAAGAUGAUGUC (((((..((((((((.......((((........))))..((((((....))))))..))))))))..)))))..........((((.....))))........... ( -31.00) >rn3.chr4/42374766-42374872 UUGUAACCCCACUGAAUUCUGUGCCUGAGAACAAAGGCUAAUUUCUGCUCAGAAAUCCUCAGUGGGUAUGCAAAUGCAGCCCACUGAAAUAUUCAGAAGAUGAUGU ...........((((((.....((((........))))..((((((....))))))..(((((((((.(((....))))))))))))...)))))).......... ( -32.60) >galGal2.chr1/120-0 UUGCAAGUCAGUUUAGUUCUGUGCUUCAGAACAAAGGGCAGUUCCUGCUGAACACUUCUCAAUGGAUAUGUAGAUGAGAGAUGAGAUGCAGUGUUACUGAAAUAUUCAGAAGUUGAUACU .((((..(((((((.((((((.....))))))....(((((...)))))))))..((((((.............)))))).)))..))))((((((((((.....))))....)))))). ( -29.72) >consensus UUGUAACCCCACUGAAUUCUGUGCCUGAGAACAAAGGGUAAUUUCUGCUCAGCAAUCCUCAGUGGGUAUGUAAAUG_____________AAUGCUACUGAAAUAUUCAGAAGAUGAUACC (((((..((((((((.........(((((.....((((....)))).)))))......))))))))..))))).......................((((.....))))........... (-20.84 = -19.64 + -1.20)
Consensus structure
Secondary structure graph
Montain plot
Dotplot
