Structure #174122

Summary

Genome/Assembly	hg17
Chromosome/Contig	chr7
Strand	+
Position	126,489,350 - 126,489,467
Number of sequences	4
Organisms	human, mouse, rat, dog
Mean pairwise identity	79.8
Columns	120
Mean single MFE	-42.08
Consensus MFE	-29.19
Combinations/base pair	46 / 33 = 1.39
SCI	0.69
z-score	-1.71
RNA class probability	0.703828

This structure is part of cluster 96693

Alignment

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RNAz output

	  
###########################  RNAz 0.1.1  #############################

 Sequences: 4
 Slice: 1 to 120
 Columns: 120
 Strand: +
 Mean pairwise identity:  79.80
 Mean single sequence MFE: -42.08
 Consensus MFE: -29.19
 Energy contribution: -28.75
 Covariance contribution:  -0.44
 Mean z-score:  -1.71
 Structure conservation index:   0.69
 SVM decision value:   0.36
 SVM RNA-class probability: 0.703827
 Prediction: RNA

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>hg17.chr7/126489350-126489467
AUAAGGGCAAUAAGGCUGGCUGUGGCUUUGGAAGCCUAAGGAGGCCGAGUGAGCCUCUUGGGGAAGAAAUGCCUAAUGAGCUGCCUUUCUCCUUUCCCUAUUGAUCAUUACCUGCAG
...((((....(((((.((((..(((.((.....(((.(((((((.......))))))).)))....)).))).....)))))))))........)))).................. ( -33.50)
>mm5.chr6/27990188-27990307
AUGAGGACAACACAGCUGGCUGUGGCUUUGGAUGGUUUUGACAAGGCCCAGUAAGCUGCUAAGGAGAGAAGUGGCUAACGAGCUGCUUGUCUCGUUUUCCUAUUGAUCAUCACCUGCAG
...((((.(((.(((((.((((.(((((((...........))))))))))).))))).....((((.(((..(((....)))..))).))))))).)))).................. ( -47.40)
>rn3.chr4/55165012-55165130
AUGAGGACAACAUAGCUGGCUGUGGCUUUGGACGGUUUGACAAGGCCCAGUAAGCUGCUAGGGAGAGAAGUGGCUAACGAGCUGCUUGUCUUCUCUUCCUAUUGAUCAUCACCUGCAG
.(((((......(((((.((((.(((((((..........))))))))))).))))).((((((((((((.(((.........)))...))))))))))))..........))).)). ( -46.20)
>canFam1.chr14/52018080-52017962
AUGAGGACAGCACAGUUGGUUGUGGCUUUGGAGGCCUGACAAGGCUAAGUGAGCUGCUCAGGGGAGAAGGGCCUAGCGAGCCUGCUUUUCUCCUUUCCUUAUGGAUCUUCACCUGCGG
.((((((((((.((.((((((..((((.....))))......)))))).)).))))...((((((((((((((....).)))..)))))))))).(((....)))))))))....... ( -41.20)
>consensus
AUGAGGACAACACAGCUGGCUGUGGCUUUGGAAG__CCUGACAAGGCCCAGUAAGCUGCUAAGGAGAGAAGUGCCUAACGAG_CUGCUUGUCUCCUUUCCCUAUUGAUCAUCACCUGCAG
...(((......(((((.((((.(((((((...........))))))))))).))))).(((((((((.((.(((..........)))...)).)))))))))..........))).... (-29.19 = -28.75 +  -0.44) 

	

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Consensus structure

Secondary structure graph

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Montain plot

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Dotplot

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